Recent advances in metabolic engineering of Saccharomyces cerevisiae: new tools and their applications

J Lian, S Mishra, H Zhao - Metabolic engineering, 2018 - Elsevier
Metabolic engineering aims to develop efficient cell factories by rewiring cellular
metabolism. As one of the most commonly used cell factories, Saccharomyces cerevisiae …

Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks

PA Saa, LK Nielsen - Biotechnology advances, 2017 - Elsevier
Kinetic models are critical to predict the dynamic behaviour of metabolic networks.
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …

Sobol sensitivity analysis: a tool to guide the development and evaluation of systems pharmacology models

XY Zhang, MN Trame, LJ Lesko… - CPT: pharmacometrics & …, 2015 - Wiley Online Library
A systems pharmacology model typically integrates pharmacokinetic, biochemical network,
and systems biology concepts into a unifying approach. It typically consists of a large …

Comprehensive review of models and methods for inferences in bio-chemical reaction networks

P Loskot, K Atitey, L Mihaylova - Frontiers in genetics, 2019 - frontiersin.org
The key processes in biological and chemical systems are described by networks of
chemical reactions. From molecular biology to biotechnology applications, computational …

Assessment of prediction uncertainty quantification methods in systems biology

AF Villaverde, E Raimúndez… - … ACM transactions on …, 2022 - ieeexplore.ieee.org
Biological processes are often modelled using ordinary differential equations. The unknown
parameters of these models are estimated by optimizing the fit of model simulation and …

Identifying spatio-temporal seizure propagation patterns in epilepsy using Bayesian inference

AN Vattikonda, M Hashemi, V Sip… - Communications …, 2021 - nature.com
Focal drug resistant epilepsy is a neurological disorder characterized by seizures caused by
abnormal activity originating in one or more regions together called as epileptogenic zone …