Covalent labeling of nucleic acids

N Klöcker, FP Weissenboeck… - Chemical Society Reviews, 2020 - pubs.rsc.org
Labeling of nucleic acids is required for many studies aiming to elucidate their functions and
dynamics in vitro and in cells. Out of the numerous labeling concepts that have been …

Miniaturized chemical tags for optical imaging

S Benson, F De Moliner, W Tip**… - Angewandte Chemie …, 2022 - Wiley Online Library
Recent advances in optical bioimaging have prompted the need for minimal chemical
reporters that can retain the molecular recognition properties and activity profiles of …

Enzymatic synthesis of base-functionalized nucleic acids for sensing, cross-linking, and modulation of protein–DNA binding and transcription

M Hocek - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Protein–DNA interactions are important in replication, transcription, repair, as
well as epigenetic modifications of DNA, which involve methylation and demethylation of …

Real‐time Imaging of Nascent DNA in Live Cells by Monitoring the Fluorescence Lifetime of DNA‐Incorporated Thiazole Orange‐Modified Nucleotides

M Kuba, P Khoroshyy, M Lepšík… - Angewandte Chemie …, 2023 - Wiley Online Library
A modified 2′‐deoxycytidine triphosphate derivative (dCTOTP) bearing a thiazole orange
moiety tethered via an oligoethylene glycol linker was designed and synthesized. The …

trans-Cyclooctene- and Bicyclononyne-Linked Nucleotides for Click Modification of DNA with Fluorogenic Tetrazines and Live Cell Metabolic Labeling and Imaging

A Spampinato, E Kuzmova, R Pohl… - Bioconjugate …, 2023 - ACS Publications
A series of 2′-deoxyribonucleoside triphosphates (dNTPs) bearing 2-or 4-linked trans-
cyclooctene (TCO) or bicyclononyne (BCN) tethered through a shorter propargylcarbamate …

Nucleic acid enzymes based on functionalized nucleosides

M Hollenstein - Current Opinion in Chemical Biology, 2019 - Elsevier
Highlights•Nucleic acid-based enzymes are highly potential biosensing and therapeutic
tools.•Description of the chemical methods designed to improve the properties of these …

Switching transcription with bacterial RNA polymerase through photocaging, photorelease and phosphorylation reactions in the major groove of DNA

Z Vaníková, M Janoušková, M Kambová, L Krásný… - Chemical …, 2019 - pubs.rsc.org
We report proof of principle biomimetic switching of transcription in vitro through non-natural
chemical reactions in the major groove of DNA templates. Photocaged DNA templates …

Active Uptake and Trafficking of Nucleoside Triphosphates In Vivo

VN Schreier, MO Loehr, E Lattmann… - ACS Chemical …, 2022 - ACS Publications
Modified nucleoside triphosphates (NTPs) are powerful probes and medicines, but their
anionic character impedes membrane permeability. As such, invasive delivery techniques …

Nucleotides Bearing Red Viscosity-Sensitive Dimethoxy-Bodipy Fluorophore for Enzymatic Incorporation and DNA Labeling

M Kuba, R Pohl, T Kraus, M Hocek - Bioconjugate Chemistry, 2022 - ACS Publications
Nucleosides and 2′-deoxyribonucleoside triphosphates (dNTPs) bearing 3, 3′-dimethoxy-
2, 2′-diphenyl-6-(4-hydroxyphenyl)-bodipy fluorophore attached through a propargyl or …

Lipid-linked nucleoside triphosphates for enzymatic synthesis of hydrophobic oligonucleotides with enhanced membrane anchoring efficiency

D Kodr, E Kužmová, R Pohl, T Kraus, M Hocek - Chemical Science, 2023 - pubs.rsc.org
We designed and synthesized a series of 2′-deoxyribonucleoside triphosphates (dNTPs)
bearing various lipid moieties. Fatty acid-and cholesterol-modified dNTPs proved to be …