Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

A pragmatic guide to enrichment strategies for mass spectrometry–based glycoproteomics

NM Riley, CR Bertozzi, SJ Pitteri - Molecular & Cellular Proteomics, 2021 - ASBMB
Glycosylation is a prevalent, yet heterogeneous modification with a broad range of
implications in molecular biology. This heterogeneity precludes enrichment strategies that …

Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3

WF Zeng, WQ Cao, MQ Liu, SM He, PY Yang - Nature Methods, 2021 - nature.com
Great advances have been made in mass spectrometric data interpretation for intact
glycopeptide analysis. However, accurate identification of intact glycopeptides and modified …

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

R Kawahara, A Chernykh, K Alagesan, M Bern… - Nature …, 2021 - nature.com
Glycoproteomics is a powerful yet analytically challenging research tool. Software packages
aiding the interpretation of complex glycopeptide tandem mass spectra have appeared, but …

Recent advances in computational algorithms and software for large-scale glycoproteomics

DA Polasky, AI Nesvizhskii - Current Opinion in Chemical Biology, 2023 - Elsevier
Glycoproteomics, or characterizing glycosylation events at a proteome scale, has seen rapid
advances in methods for analyzing glycopeptides by tandem mass spectrometry in recent …

Current strategies for characterization of mucin-domain glycoproteins

D Ince, TM Lucas, SA Malaker - Current Opinion in Chemical Biology, 2022 - Elsevier
Glycosylation, and especially O-linked glycosylation, remains a critical blind spot in the
understanding of post-translational modifications. Due to their nature as proteins defined by …

Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE

J Chongsaritsinsuk, AD Steigmeyer… - Nature …, 2023 - nature.com
Mucin-domain glycoproteins are densely O-glycosylated and play critical roles in a host of
biological functions. In particular, the T cell immunoglobulin and mucin-domain containing …

Classification, structural biology, and applications of mucin domain-targeting proteases

DJ Shon, A Kuo, MJ Ferracane… - Biochemical …, 2021 - portlandpress.com
Epithelial surfaces throughout the body are coated by mucins, a class of proteins carrying
domains characterized by a high density of O-glycosylated serine and threonine residues …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Large-Scale and Site-Specific Map** of the Murine Brain O-Glycoproteome with IMPa

S Suttapitugsakul, Y Matsumoto, RP Aryal… - Analytical …, 2023 - ACS Publications
Altered protein glycosylation is typically associated with cognitive defects and other
phenotypes, but there is a lack of knowledge about the brain glycoproteome. Here, we used …