Force-clamp spectroscopy monitors the folding trajectory of a single protein

JM Fernandez, H Li - Science, 2004 - science.org
We used force-clamp atomic force micoscopy to measure the end-to-end length of the small
protein ubiquitin during its folding reaction at the single-molecule level. Ubiquitin was first …

Coil‐globule collapse in flexible macromolecules

BM Baysal, FE Karasz - Macromolecular Theory and …, 2003 - Wiley Online Library
The transition of a solvated flexible macromolecular chain from random coil behavior in the θ‐
state to a globular compact form in the collapsed state has been the subject of extensive …

Columnar architecture sculpted by GABA circuits in develo** cat visual cortex

TK Hensch, MP Stryker - Science, 2004 - science.org
The mammalian visual cortex is organized into columns. Here, we examine cortical
influences upon develo** visual afferents in the cat by altering intrinsic γ-aminobutyric …

Single homopolypeptide chains collapse into mechanically rigid conformations

L Dougan, J Li, CL Badilla, BJ Berne… - Proceedings of the …, 2009 - pnas.org
Huntington's disease is linked to the insertion of glutamine (Q) in the protein huntingtin,
resulting in polyglutamine (polyQ) expansions that self-associate to form aggregates. While …

Internal friction and nonequilibrium unfolding of polymeric globules

A Alexander-Katz, H Wada, RR Netz - Physical review letters, 2009 - APS
The stretching response of a single collapsed homopolymer is studied using Brownian
dynamic simulations. The irreversibly dissipated work is found to be dominated by internal …

Collapse of a confined polyelectrolyte chain under an ac electric field

K Radhakrishnan, SP Singh - Macromolecules, 2021 - ACS Publications
Field-driven transport through nanofluidic devices has emerged as one of the promising
tools for characterizing the conformational and dynamical response of long polyelectrolytes …

Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations

TR Einert, CE Sing, A Alexander-Katz… - The European Physical …, 2011 - Springer
We study the conformational dynamics within homopolymer globules by solvent-implicit
Brownian dynamics simulations. A strong dependence of the internal chain dynamics on the …

Relaxation of ultralarge VWF bundles in a microfluidic–AFM hybrid reactor

DM Steppich, JI Angerer, K Sritharan… - Biochemical and …, 2008 - Elsevier
The crucial role of the biopolymer “Von Willebrand factor”(VWF) in blood platelet binding is
tightly regulated by the shear forces to which the protein is exposed in the blood flow. Under …

Force spectroscopy of self-associating homopolymers

CE Sing, A Alexander-Katz - Macromolecules, 2012 - ACS Publications
This paper presents a theoretical and simulation investigation into the force–extension
behavior of self-associating homopolymers. In particular, we show how long-lasting …

Mechanical unfolding of a homopolymer globule studied by self-consistent field modeling

AA Polotsky, MI Charlaganov, FAM Leermakers… - …, 2009 - ACS Publications
We present results of numerical self-consistent field (SCF) calculations for the equilibrium
mechanical unfolding of a globule formed by a single flexible polymer chain collapsed in a …