Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives

X Yu, Z Liu, X Sun - Plant Communications, 2023 - cell.com
Plants contain a large number of cell types and exhibit complex regulatory mechanisms.
Studies at the single-cell level have gradually become more common in plant science …

Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants

C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …

Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana

K Jean-Baptiste, JL McFaline-Figueroa… - The plant …, 2019 - academic.oup.com
Single cell RNA sequencing can yield high-resolution cell-type–specific expression
signatures that reveal new cell types and the developmental trajectories of cell lineages …

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and develo** leaf

CB Lopez-Anido, A Vatén, NK Smoot, N Sharma… - Developmental cell, 2021 - cell.com
Dynamic cell identities underlie flexible developmental programs. The stomatal lineage in
the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can …

CRISPR-TSKO: a technique for efficient mutagenesis in specific cell types, tissues, or organs in Arabidopsis

W Decaestecker, RA Buono, ML Pfeiffer… - The Plant …, 2019 - academic.oup.com
Detailed functional analyses of many fundamentally important plant genes via conventional
loss-of-function approaches are impeded by the severe pleiotropic phenotypes resulting …

Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection

C Procko, T Lee, A Borsuk, BOR Bargmann… - The Plant …, 2022 - academic.oup.com
Like other complex multicellular organisms, plants are composed of different cell types with
specialized shapes and functions. For example, most laminar leaves consist of multiple …

A gene regulatory network for root epidermis cell differentiation in Arabidopsis

A Bruex, RM Kainkaryam, Y Wieckowski, YH Kang… - PLoS …, 2012 - journals.plos.org
The root epidermis of Arabidopsis provides an exceptional model for studying the molecular
basis of cell fate and differentiation. To obtain a systems-level view of root epidermal cell …

The vacuolar manganese transporter MTP8 determines tolerance to iron deficiency-induced chlorosis in Arabidopsis

S Eroglu, B Meier, N von Wirén, E Peiter - Plant physiology, 2016 - academic.oup.com
Iron (Fe) deficiency is a widespread nutritional disorder on calcareous soils. To identify
genes involved in the Fe deficiency response, Arabidopsis (Arabidopsis thaliana) transfer …

Quantitative characterization of genetic parts and circuits for plant synthetic biology

KA Schaumberg, MS Antunes, TK Kassaw, W Xu… - Nature …, 2016 - nature.com
Plant synthetic biology promises immense technological benefits, including the potential
development of a sustainable bio-based economy through the predictive design of synthetic …

A lignin molecular brace controls precision processing of cell walls critical for surface integrity in Arabidopsis

Y Lee, TH Yoon, J Lee, SY Jeon, JH Lee, MK Lee… - Cell, 2018 - cell.com
The cell wall, a defining feature of plants, provides a rigid structure critical for bonding cells
together. To overcome this physical constraint, plants must process cell wall linkages during …