Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives
X Yu, Z Liu, X Sun - Plant communications, 2023 - cell.com
Plants contain a large number of cell types and exhibit complex regulatory mechanisms.
Studies at the single-cell level have gradually become more common in plant science …
Studies at the single-cell level have gradually become more common in plant science …
Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants
C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …
Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and develo** leaf
Dynamic cell identities underlie flexible developmental programs. The stomatal lineage in
the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can …
the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can …
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana
K Jean-Baptiste, JL McFaline-Figueroa… - The plant …, 2019 - academic.oup.com
Single cell RNA sequencing can yield high-resolution cell-type–specific expression
signatures that reveal new cell types and the developmental trajectories of cell lineages …
signatures that reveal new cell types and the developmental trajectories of cell lineages …
Cell type–specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division
EJ Kim, C Zhang, B Guo, T Eekhout… - Proceedings of the …, 2023 - National Acad Sciences
In Arabidopsis thaliana, brassinosteroid (BR) signaling and stomatal development are
connected through the SHAGGY/GSK3-like kinase BR INSENSITIVE2 (BIN2). BIN2 is a key …
connected through the SHAGGY/GSK3-like kinase BR INSENSITIVE2 (BIN2). BIN2 is a key …
CRISPR-TSKO: a technique for efficient mutagenesis in specific cell types, tissues, or organs in Arabidopsis
Detailed functional analyses of many fundamentally important plant genes via conventional
loss-of-function approaches are impeded by the severe pleiotropic phenotypes resulting …
loss-of-function approaches are impeded by the severe pleiotropic phenotypes resulting …
A gene regulatory network for root epidermis cell differentiation in Arabidopsis
A Bruex, RM Kainkaryam, Y Wieckowski, YH Kang… - PLoS …, 2012 - journals.plos.org
The root epidermis of Arabidopsis provides an exceptional model for studying the molecular
basis of cell fate and differentiation. To obtain a systems-level view of root epidermal cell …
basis of cell fate and differentiation. To obtain a systems-level view of root epidermal cell …
Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection
Like other complex multicellular organisms, plants are composed of different cell types with
specialized shapes and functions. For example, most laminar leaves consist of multiple …
specialized shapes and functions. For example, most laminar leaves consist of multiple …
The vacuolar manganese transporter MTP8 determines tolerance to iron deficiency-induced chlorosis in Arabidopsis
Iron (Fe) deficiency is a widespread nutritional disorder on calcareous soils. To identify
genes involved in the Fe deficiency response, Arabidopsis (Arabidopsis thaliana) transfer …
genes involved in the Fe deficiency response, Arabidopsis (Arabidopsis thaliana) transfer …
The YTHDF proteins ECT2 and ECT3 bind largely overlap** target sets and influence target mRNA abundance, not alternative polyadenylation
Gene regulation via N6-methyladenosine (m6A) in mRNA involves RNA-binding proteins
that recognize m6A via a YT521-B homology (YTH) domain. The plant YTH domain proteins …
that recognize m6A via a YT521-B homology (YTH) domain. The plant YTH domain proteins …