Current and emerging trends in techniques for plant pathogen detection
M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …
important crops, resulting in economic and social adversity. The spread of such plant …
High‐throughput identification and diagnostics of pathogens and pests: overview and practical recommendations
High‐throughput identification technologies provide efficient tools for understanding the
ecology and functioning of microorganisms. Yet, these methods have been only rarely used …
ecology and functioning of microorganisms. Yet, these methods have been only rarely used …
Next generation sequencing for detection and discovery of plant viruses and viroids: comparison of two approaches
Next generation sequencing (NGS) technologies are becoming routinely employed in
different fields of virus research. Different sequencing platforms and sample preparation …
different fields of virus research. Different sequencing platforms and sample preparation …
Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description
High‐throughput sequencing (HTS) is a powerful tool that enables the simultaneous
detection and potential identification of any organisms present in a sample. The growing …
detection and potential identification of any organisms present in a sample. The growing …
Insect-specific viruses: from discovery to potential translational applications
Highlights•NGS and bioinformatics analyses show that the insect virosphere contains many
previously undiscovered viruses of many taxa.•Insect-specific viruses (ISVs) do not infect …
previously undiscovered viruses of many taxa.•Insect-specific viruses (ISVs) do not infect …
Comparative study on three viral enrichment approaches based on RNA extraction for plant virus/viroid detection using high-throughput sequencing
YZA Gaafar, H Ziebell - PLoS One, 2020 - journals.plos.org
High-throughput sequencing (HTS) has become increasingly popular as virus diagnostic
tool. It has been used to detect and identify plant viruses and viroids in different types of …
tool. It has been used to detect and identify plant viruses and viroids in different types of …
High-throughput detection of a large set of viruses and viroids of pome and stone fruit trees by multiplex PCR-based amplicon sequencing
A comprehensive diagnostic method of known plant viruses and viroids is necessary to
provide an accurate phytosanitary status of fruit trees. However, most widely used detection …
provide an accurate phytosanitary status of fruit trees. However, most widely used detection …
Targeted genome sequencing (TG-Seq) approaches to detect plant viruses
S Maina, L Zheng, BC Rodoni - Viruses, 2021 - mdpi.com
Globally, high-throughput sequencing (HTS) has been used for virus detection in germplasm
certification programs. However, sequencing costs have impeded its implementation as a …
certification programs. However, sequencing costs have impeded its implementation as a …
Canine meningoencephalitis of unknown origin—the search for infectious agents in the cerebrospinal fluid via deep sequencing
JN Nessler, WK Jo, ADME Osterhaus… - Frontiers in Veterinary …, 2021 - frontiersin.org
Meningoencephalitis of unknown origin (MUO) describes a group of meningoencephalitides
in dogs with a hitherto unknown trigger. An infectious agent has been suggested as one …
in dogs with a hitherto unknown trigger. An infectious agent has been suggested as one …
HTS-based diagnostics of sugarcane viruses: Seasonal variation and its implications for accurate detection
Rapid global germplasm trade has increased concern about the spread of plant pathogens
and pests across borders that could become established, affecting agriculture and …
and pests across borders that could become established, affecting agriculture and …