A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

[HTML][HTML] Behavioral and neuroanatomical phenotypes in mouse models of autism

J Ellegood, JN Crawley - Neurotherapeutics, 2015 - Elsevier
In order to understand the consequences of the mutation on behavioral and biological
phenotypes relevant to autism, mutations in many of the risk genes for autism spectrum …

[HTML][HTML] Waxholm Space atlas of the Sprague Dawley rat brain

EA Papp, TB Leergaard, E Calabrese, GA Johnson… - Neuroimage, 2014 - Elsevier
Three-dimensional digital brain atlases represent an important new generation of
neuroinformatics tools for understanding complex brain anatomy, assigning location to …

MicroCT for comparative morphology: simple staining methods allow high-contrast 3D imaging of diverse non-mineralized animal tissues

BD Metscher - BMC physiology, 2009 - Springer
Background Comparative, functional, and developmental studies of animal morphology
require accurate visualization of three-dimensional structures, but few widely applicable …

Intraoperative label‐free photoacoustic histopathology of clinical specimens

JW Baik, H Kim, M Son, J Choi, KG Kim… - Laser & Photonics …, 2021 - Wiley Online Library
During cancer resection surgeries, intraoperative histopathologic examination of the surgical
specimen is crucial for tumor margin identification. A conventional frozen‐section analysis …

Susceptibility tensor imaging

C Liu - Magnetic Resonance in Medicine: An Official Journal of …, 2010 - Wiley Online Library
Heterogeneity of magnetic susceptibility within brain tissues creates unique contrast
between gray and white matter in magnetic resonance phase images acquired by gradient …

Aldehyde fixative solutions alter the water relaxation and diffusion properties of nervous tissue

TM Shepherd, PE Thelwall, GJ Stanisz… - … in Medicine: An …, 2009 - Wiley Online Library
Chemically‐fixed nervous tissues are well‐suited for high‐resolution, time‐intensive MRI
acquisitions without motion artifacts, such as those required for brain atlas projects, but the …

Waxholm space: an image-based reference for coordinating mouse brain research

GA Johnson, A Badea, J Brandenburg, G Cofer… - Neuroimage, 2010 - Elsevier
We describe an atlas of the C57BL/6 mouse brain based on MRI and conventional Nissl
histology. Magnetic resonance microscopy was performed on a total of 14 specimens that …

Morphometric analysis of the C57BL/6J mouse brain

A Badea, AA Ali-Sharief, GA Johnson - Neuroimage, 2007 - Elsevier
Magnetic resonance microscopy (MRM), when used in conjunction with active staining, can
produce high-resolution, high-contrast images of the mouse brain. Using MRM, we imaged …

Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent

RJ Lipinski, P Hammond, SK O'Leary-Moore, JJ Ament… - 2012 - journals.plos.org
Prenatal ethanol exposure is the leading preventable cause of congenital mental disability.
Whereas a diagnosis of fetal alcohol syndrome (FAS) requires identification of a specific …