Estimating diversification rates from phylogenetic information

RE Ricklefs - Trends in ecology & evolution, 2007 - cell.com
Patterns of species richness reflect the balance between speciation and extinction over the
evolutionary history of life. These processes are influenced by the size and geographical …

Recovering speciation and extinction dynamics based on phylogenies

T Stadler - Journal of evolutionary biology, 2013 - academic.oup.com
Phylogenetic trees of only extant species contain information about the underlying
speciation and extinction pattern. In this review, I provide an overview over the different …

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

T Fujisawa, TG Barraclough - Systematic biology, 2013 - academic.oup.com
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …

GEIGER: investigating evolutionary radiations

LJ Harmon, JT Weir, CD Brock, RE Glor… - …, 2008 - academic.oup.com
GEIGER is a new software package, written in the R language, to describe evolutionary
radiations. GEIGER can carry out simulations, parameter estimation and statistical …

[書籍][B] Analysis of Phylogenetics and Evolution with R

E Paradis - 2012 - Springer
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hzar: hybrid zone analysis using an R software package

EP Derryberry, GE Derryberry, JM Maley… - Molecular ecology …, 2014 - Wiley Online Library
We present a new software package (hzar) that provides functions for fitting molecular
genetic and morphological data from hybrid zones to classic equilibrium cline models using …

Amazonian amphibian diversity is primarily derived from late Miocene Andean lineages

JC Santos, LA Coloma, K Summers, JP Caldwell… - PLoS …, 2009 - journals.plos.org
The Neotropics contains half of remaining rainforests and Earth's largest reservoir of
amphibian biodiversity. However, determinants of Neotropical biodiversity (ie, vicariance …

Quantifying phylogenetic beta diversity: distinguishing between 'true'turnover of lineages and phylogenetic diversity gradients

F Leprieur, C Albouy, J De Bortoli, PF Cowman… - 2012 - journals.plos.org
The evolutionary dissimilarity between communities (phylogenetic beta diversity PBD) has
been increasingly explored by ecologists and biogeographers to assess the relative roles of …

The productivity-biodiversity relationship varies across diversity dimensions

P Brun, NE Zimmermann, CH Graham… - Nature …, 2019 - nature.com
Understanding the processes that drive the dramatic changes in biodiversity along the
productivity gradient remains a major challenge. Insight from simple, bivariate relationships …

[PDF][PDF] Phylogenetic comparative methods: learning from trees

L Harmon - 2019 - ecoevorxiv.org
Evolution is happening all around us. In many cases–lately, due to technological advances
in molecular biology–scientists can now describe the evolutionary process in exquisite …