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Co-occurrence of Campylobacter Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host …
High Campylobacter prevalence during early childhood has been associated with stunting
and environmental enteric dysfunction (EED), especially in low resource settings. This study …
and environmental enteric dysfunction (EED), especially in low resource settings. This study …
Cobamide sharing is predicted in the human skin microbiome
The skin microbiome is a key player in human health, with diverse functions ranging from
defense against pathogens to education of the immune system. While recent studies have …
defense against pathogens to education of the immune system. While recent studies have …
Upper respiratory microbial communities of healthy populations are shaped by niche and age
S Zelasko, MH Swaney, S Sandstrom, TC Davenport… - Microbiome, 2024 - Springer
Background Alterations in upper respiratory microbiomes have been implicated in sha**
host health trajectories, including by limiting mucosal pathogen colonization. However …
host health trajectories, including by limiting mucosal pathogen colonization. However …
[HTML][HTML] Investigating the cow skin and teat canal microbiomes of the bovine udder using different sampling and sequencing approaches
There is a need for standardized, efficient, and practical sampling methods to support large
population-based studies of the internal and external epithelial microbiomes of the bovine …
population-based studies of the internal and external epithelial microbiomes of the bovine …
Qmatey: an automated pipeline for fast exact matching-based alignment and strain-level taxonomic binning and profiling of metagenomes
Metagenomics is a powerful tool for understanding organismal interactions; however,
classification, profiling and detection of interactions at the strain level remain challenging …
classification, profiling and detection of interactions at the strain level remain challenging …
Metagenomic tracking of antibiotic resistance genes through a pre‐harvest vegetable production system: an integrated lab‐, microcosm‐and greenhouse‐scale …
Prior research demonstrated the potential for agricultural production systems to contribute to
the environmental spread of antibiotic resistance genes (ARGs). However, there is a need …
the environmental spread of antibiotic resistance genes (ARGs). However, there is a need …
Microbiome-informed food safety and quality: longitudinal consistency and cross-sectional distinctiveness of retail chicken breast microbiomes
S Li, DA Mann, S Zhang, Y Qi, RJ Meinersmann… - Msystems, 2020 - journals.asm.org
Microorganisms and their communities on foods are important determinants and indicators
of food safety and quality. Despite growing interests in studying food and food-related …
of food safety and quality. Despite growing interests in studying food and food-related …
[HTML][HTML] Whole-genome sequencing analysis to identify infection with multiple species of nontuberculous mycobacteria
V Khieu, P Ananta, O Kaewprasert, M Laohaviroj… - Pathogens, 2021 - mdpi.com
Mixed infection with multiple species of nontuberculous mycobacteria (NTM) is difficult to
identify and to treat. Current conventional molecular-based methods for identifying mixed …
identify and to treat. Current conventional molecular-based methods for identifying mixed …
Clinical metagenomics is increasingly accurate and affordable to detect enteric bacterial pathogens in stool
CL Peterson, D Alexander, JCY Chen, H Adam… - Microorganisms, 2022 - mdpi.com
Stool culture is the gold standard method to diagnose enteric bacterial infections; however,
many clinical laboratories are transitioning to syndromic multiplex PCR panels. PCR is …
many clinical laboratories are transitioning to syndromic multiplex PCR panels. PCR is …
[HTML][HTML] Efficient and quality-optimized metagenomic pipeline designed for taxonomic classification in routine microbiological clinical tests
Efficient and Quality-Optimized Metagenomic Pipeline Designed for Taxonomic Classification
in Routine Microbiological Clinical Tests Next Article in Journal First Record of Hepatozoon …
in Routine Microbiological Clinical Tests Next Article in Journal First Record of Hepatozoon …