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The evolution of insect biodiversity
Insects comprise over half of all described animal species. Together with the Protura
(coneheads), Collembola (springtails) and Diplura (two-pronged bristletails), insects form …
(coneheads), Collembola (springtails) and Diplura (two-pronged bristletails), insects form …
A practical guide to design and assess a phylogenomic study
J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination
Artificial intelligence-based protein structure prediction methods such as AlphaFold have
revolutionized structural biology. The accuracies of these predictions vary, however, and …
revolutionized structural biology. The accuracies of these predictions vary, however, and …
Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor
AK Redmond, D Casey, MK Gundappa… - Nature …, 2023 - nature.com
Whole genome duplication (WGD) is a dramatic evolutionary event generating many new
genes and which may play a role in survival through mass extinctions. Paddlefish and …
genes and which may play a role in survival through mass extinctions. Paddlefish and …
[PDF][PDF] Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life
Molecular phylogenies have yielded strong support for many parts of the amphibian Tree of
Life, but poor support for the resolution of deeper nodes, including relationships among …
Life, but poor support for the resolution of deeper nodes, including relationships among …
PhyloFisher: a phylogenomic package for resolving eukaryotic relationships
Phylogenomic analyses of hundreds of protein-coding genes aimed at resolving
phylogenetic relationships is now a common practice. However, no software currently exists …
phylogenetic relationships is now a common practice. However, no software currently exists …
Successive climate crises in the deep past drove the early evolution and radiation of reptiles
Climate change–induced mass extinctions provide unique opportunities to explore the
impacts of global environmental disturbances on organismal evolution. However, their …
impacts of global environmental disturbances on organismal evolution. However, their …
New approaches for inferring phylogenies in the presence of paralogs
The availability of whole genome sequences was expected to supply essentially unlimited
data for phylogenetics. However, strict reliance on single-copy genes for this purpose has …
data for phylogenetics. However, strict reliance on single-copy genes for this purpose has …
The squamate tree of life
Squamates (lizards, snakes, and their kin such as amphisbaenians, or “worm lizards”)
represent the world's most diverse clade of terrestrial vertebrates with∼ 11,000 described …
represent the world's most diverse clade of terrestrial vertebrates with∼ 11,000 described …
Prey shifts drive venom evolution in cone snails
Venom systems are complex traits that have independently emerged multiple times in
diverse plant and animal phyla. Within each venomous lineage there typically exists …
diverse plant and animal phyla. Within each venomous lineage there typically exists …