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The role of metadata in reproducible computational research
Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …
silico analyses, packaging the transformation of raw data to published results. In addition to …
Reproducibility, Replicability and Repeatability: A survey of reproducible research with a focus on high performance computing
Reproducibility is widely acknowledged as a fundamental principle in scientific research.
Currently, the scientific community grapples with numerous challenges associated with …
Currently, the scientific community grapples with numerous challenges associated with …
Do datasets have politics? Disciplinary values in computer vision dataset development
Data is a crucial component of machine learning. The field is reliant on data to train, validate,
and test models. With increased technical capabilities, machine learning research has …
and test models. With increased technical capabilities, machine learning research has …
[LIBRO][B] Reproducibility and replicability in science
National Academies of Sciences, Medicine, Policy… - 2019 - books.google.com
One of the pathways by which the scientific community confirms the validity of a new
scientific discovery is by repeating the research that produced it. When a scientific effort fails …
scientific discovery is by repeating the research that produced it. When a scientific effort fails …
Functional R code is rare in species distribution and abundance papers
Analytic reproducibility is important for scientific credibility in ecology, but the extent to which
scientific literature meets this criterion is not well understood. We surveyed 497 papers …
scientific literature meets this criterion is not well understood. We surveyed 497 papers …
Trust but verify: How to leverage policies, workflows, and infrastructure to ensure computational reproducibility in publication
This article distills findings from a qualitative study of seven reproducibility initiatives to
enumerate nine key decision points for journals seeking to address concerns about the …
enumerate nine key decision points for journals seeking to address concerns about the …
Learning from reproducing computational results: introducing three principles and the Reproduction Package
We carry out efforts to reproduce computational results for seven published articles and
identify barriers to computational reproducibility. We then derive three principles to guide the …
identify barriers to computational reproducibility. We then derive three principles to guide the …
For long-term sustainable software in bioinformatics
LP Coelho - PLOS Computational Biology, 2024 - journals.plos.org
Research software has become essential in science, including in the life sciences [1, 2].
Most of this software is designed and built by research groups funded by short-term research …
Most of this software is designed and built by research groups funded by short-term research …
CSDMS: a community platform for numerical modeling of Earth surface processes
Computational modeling occupies a unique niche in Earth and environmental sciences.
Models serve not just as scientific technology and infrastructure but also as digital containers …
Models serve not just as scientific technology and infrastructure but also as digital containers …
Scientific tests and continuous integration strategies to enhance reproducibility in the scientific software context
Continuous integration (CI) is a well-established technique in commercial and open-source
software projects, although not routinely used in scientific publishing. In the scientific …
software projects, although not routinely used in scientific publishing. In the scientific …