Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR

A Tropsha, O Isayev, A Varnek, G Schneider… - Nature Reviews Drug …, 2024 - nature.com
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …

Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …

The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods

B Zdrazil, E Felix, F Hunter, EJ Manners… - Nucleic acids …, 2024 - academic.oup.com
Abstract ChEMBL (https://www. ebi. ac. uk/chembl/) is a manually curated, high-quality, large-
scale, open, FAIR and Global Core Biodata Resource of bioactive molecules with drug-like …

Past, present, and future perspectives on computer-aided drug design methodologies

D Bassani, S Moro - Molecules, 2023 - mdpi.com
The application of computational approaches in drug discovery has been consolidated in
the last decades. These families of techniques are usually grouped under the common …

Calibrated geometric deep learning improves kinase–drug binding predictions

Y Luo, Y Liu, J Peng - Nature machine intelligence, 2023 - nature.com
Protein kinases regulate various cellular functions and hold significant pharmacological
promise in cancer and other diseases. Although kinase inhibitors are one of the largest …

Machine‐learning scoring functions for structure‐based virtual screening

H Li, KH Sze, G Lu, PJ Ballester - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Molecular docking predicts whether and how small molecules bind to a macromolecular
target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …

Towards reproducible computational drug discovery

N Schaduangrat, S Lampa, S Simeon… - Journal of …, 2020 - Springer
The reproducibility of experiments has been a long standing impediment for further scientific
progress. Computational methods have been instrumental in drug discovery efforts owing to …

Quantum machine learning algorithms for drug discovery applications

K Batra, KM Zorn, DH Foil, E Minerali… - Journal of chemical …, 2021 - ACS Publications
The growing quantity of public and private data sets focused on small molecules screened
against biological targets or whole organisms provides a wealth of drug discovery relevant …

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations

AS Rifaioglu, E Nalbat, V Atalay, MJ Martin… - Chemical …, 2020 - pubs.rsc.org
The identification of physical interactions between drug candidate compounds and target
biomolecules is an important process in drug discovery. Since conventional screening …

Exploring chemical space using natural language processing methodologies for drug discovery

H Öztürk, A Özgür, P Schwaller, T Laino… - Drug Discovery Today, 2020 - Elsevier
Highlights•Biochemical data can be represented with text-based languages codified by
humans.•Natural language processing (NLP) can be applied to textual biochemical …