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Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
Drug discovery with explainable artificial intelligence
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …
prediction of molecular structure and function, and automated generation of innovative …
The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods
Abstract ChEMBL (https://www. ebi. ac. uk/chembl/) is a manually curated, high-quality, large-
scale, open, FAIR and Global Core Biodata Resource of bioactive molecules with drug-like …
scale, open, FAIR and Global Core Biodata Resource of bioactive molecules with drug-like …
Past, present, and future perspectives on computer-aided drug design methodologies
The application of computational approaches in drug discovery has been consolidated in
the last decades. These families of techniques are usually grouped under the common …
the last decades. These families of techniques are usually grouped under the common …
Calibrated geometric deep learning improves kinase–drug binding predictions
Protein kinases regulate various cellular functions and hold significant pharmacological
promise in cancer and other diseases. Although kinase inhibitors are one of the largest …
promise in cancer and other diseases. Although kinase inhibitors are one of the largest …
Machine‐learning scoring functions for structure‐based virtual screening
Molecular docking predicts whether and how small molecules bind to a macromolecular
target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …
target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …
Towards reproducible computational drug discovery
The reproducibility of experiments has been a long standing impediment for further scientific
progress. Computational methods have been instrumental in drug discovery efforts owing to …
progress. Computational methods have been instrumental in drug discovery efforts owing to …
Quantum machine learning algorithms for drug discovery applications
The growing quantity of public and private data sets focused on small molecules screened
against biological targets or whole organisms provides a wealth of drug discovery relevant …
against biological targets or whole organisms provides a wealth of drug discovery relevant …
DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations
The identification of physical interactions between drug candidate compounds and target
biomolecules is an important process in drug discovery. Since conventional screening …
biomolecules is an important process in drug discovery. Since conventional screening …
Exploring chemical space using natural language processing methodologies for drug discovery
Highlights•Biochemical data can be represented with text-based languages codified by
humans.•Natural language processing (NLP) can be applied to textual biochemical …
humans.•Natural language processing (NLP) can be applied to textual biochemical …