Spatial components of molecular tissue biology

G Palla, DS Fischer, A Regev, FJ Theis - Nature Biotechnology, 2022 - nature.com
Methods for profiling RNA and protein expression in a spatially resolved manner are rapidly
evolving, making it possible to comprehensively characterize cells and tissues in health and …

From whole-mount to single-cell spatial assessment of gene expression in 3D

LN Waylen, HT Nim, LG Martelotto… - Communications …, 2020 - nature.com
Unravelling spatio-temporal patterns of gene expression is crucial to understanding core
biological principles from embryogenesis to disease. Here we review emerging …

A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

E Madissoon, AJ Oliver, V Kleshchevnikov… - Nature Genetics, 2023 - nature.com
Single-cell transcriptomics has allowed unprecedented resolution of cell types/states in the
human lung, but their spatial context is less well defined. To (re) define tissue architecture of …

Unified classification of mouse retinal ganglion cells using function, morphology, and gene expression

J Goetz, ZF Jessen, A Jacobi, A Mani, S Cooler… - Cell reports, 2022 - cell.com
Classification and characterization of neuronal types are critical for understanding their
function and dysfunction. Neuronal classification schemes typically rely on measurements of …

Cross-species RNA-seq for deciphering host–microbe interactions

AJ Westermann, J Vogel - Nature Reviews Genetics, 2021 - nature.com
The human body is constantly exposed to microorganisms, which entails manifold
interactions between human cells and diverse commensal or pathogenic bacteria. The …

[PDF][PDF] Protective alleles and precision healthcare in crewed spaceflight

LA Rutter, MJ MacKay, H Cope, NJ Szewczyk… - Nature …, 2024 - nature.com
Common and rare alleles are now being annotated across millions of human genomes, and
omics technologies are increasingly being used to develop health and treatment …

Decoding the spermatogenesis program: new insights from transcriptomic analyses

M Rabbani, X Zheng, GL Manske… - Annual review of …, 2022 - annualreviews.org
Spermatogenesis is a complex differentiation process coordinated spatiotemporally across
and along seminiferous tubules. Cellular heterogeneity has made it challenging to obtain …

[HTML][HTML] A new era for plant science: spatial single-cell transcriptomics

S Giacomello - Current opinion in plant biology, 2021 - Elsevier
To achieve a complete understanding of how organisms function, there is a need to study
their fundamental unit, the cell, in its spatial context. In recent years, we have seen fast …

Biofilms as more than the sum of their parts: lessons from developmental biology

GR Squyres, DK Newman - Current Opinion in Microbiology, 2024 - Elsevier
Although our understanding of both bacterial cell physiology and the complex behaviors
exhibited by bacterial biofilms is expanding rapidly, we cannot yet sum the behaviors of …

A review of spatial profiling technologies for characterizing the tumor microenvironment in immuno-oncology

B Hu, M Sajid, R Lv, L Liu, C Sun - Frontiers in Immunology, 2022 - frontiersin.org
Interpreting the mechanisms and principles that govern gene activity and how these genes
work according to-their cellular distribution in organisms has profound implications for …