Deep learning for drug repurposing: Methods, databases, and applications

X Pan, X Lin, D Cao, X Zeng, PS Yu… - Wiley …, 2022 - Wiley Online Library
Drug development is time‐consuming and expensive. Repurposing existing drugs for new
therapies is an attractive solution that accelerates drug development at reduced …

Application advances of deep learning methods for de novo drug design and molecular dynamics simulation

Q Bai, S Liu, Y Tian, T Xu… - Wiley …, 2022 - Wiley Online Library
De novo drug design is a stationary way to build novel ligands in the confined pocket of
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …

MolAICal: a soft tool for 3D drug design of protein targets by artificial intelligence and classical algorithm

Q Bai, S Tan, T Xu, H Liu, J Huang… - Briefings in …, 2021 - academic.oup.com
Deep learning is an important branch of artificial intelligence that has been successfully
applied into medicine and two-dimensional ligand design. The three-dimensional (3D) …

SSI–DDI: substructure–substructure interactions for drug–drug interaction prediction

AK Nyamabo, H Yu, JY Shi - Briefings in Bioinformatics, 2021 - academic.oup.com
A major concern with co-administration of different drugs is the high risk of interference
between their mechanisms of action, known as adverse drug–drug interactions (DDIs) …

[HTML][HTML] Medical deep learning—A systematic meta-review

J Egger, C Gsaxner, A Pepe, KL Pomykala… - Computer methods and …, 2022 - Elsevier
Deep learning has remarkably impacted several different scientific disciplines over the last
few years. For example, in image processing and analysis, deep learning algorithms were …

AI-based language models powering drug discovery and development

Z Liu, RA Roberts, M Lal-Nag, X Chen, R Huang… - Drug Discovery …, 2021 - Elsevier
The discovery and development of new medicines is expensive, time-consuming, and often
inefficient, with many failures along the way. Powered by artificial intelligence (AI), language …

[HTML][HTML] A comprehensive review of artificial intelligence and network based approaches to drug repurposing in Covid-19

F Ahmed, AM Soomro, ARC Salih… - Biomedicine & …, 2022 - Elsevier
Conventional drug discovery and development is tedious and time-taking process; because
of which it has failed to keep the required pace to mitigate threats and cater demands of viral …

Comprehensive evaluation of deep and graph learning on drug–drug interactions prediction

X Lin, L Dai, Y Zhou, ZG Yu, W Zhang… - Briefings in …, 2023 - academic.oup.com
Recent advances and achievements of artificial intelligence (AI) as well as deep and graph
learning models have established their usefulness in biomedical applications, especially in …

Advances of artificial intelligence in anti-cancer drug design: a review of the past decade

L Wang, Y Song, H Wang, X Zhang, M Wang, J He… - Pharmaceuticals, 2023 - mdpi.com
Anti-cancer drug design has been acknowledged as a complicated, expensive, time-
consuming, and challenging task. How to reduce the research costs and speed up the …

A deep learning method for repurposing antiviral drugs against new viruses via multi-view nonnegative matrix factorization and its application to SARS-CoV-2

X Su, L Hu, Z You, P Hu, L Wang… - Briefings in …, 2022 - academic.oup.com
The outbreak of COVID-19 caused by SARS-coronavirus (CoV)-2 has made millions of
deaths since 2019. Although a variety of computational methods have been proposed to …