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The EcoCyc Database (2023)
EcoCyc is a bioinformatics database available online at EcoCyc. org that describes the
genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term …
genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term …
The ecocyc database
EcoCyc is a bioinformatics database available at EcoCyc. org that describes the genome
and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the …
and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the …
The global trust inventory as a “proxy measure” for social capital: Measurement and impact in 11 democratic societies
The Global Trust Inventory (GTI), conceptually assessing trust in others ranging from close
interpersonal relationships to relationships with government and financial institutions as a …
interpersonal relationships to relationships with government and financial institutions as a …
A systematic review of mathematical models of the Ebola virus disease
Several studies have surveyed the literature of mathematical modelling of the Ebola virus
disease (EVD). However, most of these reviews did not report any work published after …
disease (EVD). However, most of these reviews did not report any work published after …
Accessing the role of trust profiles for the economic growth of societies: a stochastic rule-based simulation using the prisoner's dilemma game
According to Robert Putnam, trust can be a proxy for social capital. Thus, a higher societal
trust could be related to economic growth. To test this hypothesis, we simulated the …
trust could be related to economic growth. To test this hypothesis, we simulated the …
The explicit approximation approach to solve stiff chemical Langevin equations
The chemical Langevin equations are reputable simulation schemes to explore the
dynamics of chemical systems. We propose a new approach to simulate stochastic …
dynamics of chemical systems. We propose a new approach to simulate stochastic …
Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages
Motivation Cells are complex systems composed of hundreds of genes whose products
interact to produce elaborated behaviors. To control such behaviors, cells rely on …
interact to produce elaborated behaviors. To control such behaviors, cells rely on …
Rule-based models and applications in biology
Á Bustos, I Fuenzalida, R Santibáñez… - … Cell Biology: Methods …, 2018 - Springer
Complex systems are governed by dynamic processes whose underlying causal rules are
difficult to unravel. However, chemical reactions, molecular interactions, and many other …
difficult to unravel. However, chemical reactions, molecular interactions, and many other …
Pleione: A tool for statistical and multi-objective calibration of Rule-based models
Mathematical models based on Ordinary Differential Equations (ODEs) are frequently used
to describe and simulate biological systems. Nevertheless, such models are often difficult to …
to describe and simulate biological systems. Nevertheless, such models are often difficult to …
Multiscale modeling on biological systems
One of the many challenging and fascinating facets of biological systems is the
simultaneous and concerted occurrence of a variety of biochemical and biophysical …
simultaneous and concerted occurrence of a variety of biochemical and biophysical …