Evolution of isotype switching

J Stavnezer, CT Amemiya - Seminars in immunology, 2004 - Elsevier
This review discusses evolution of the process of Ig heavy chain class switching, relating it to
the first appearance of somatic hypermutation (SHM) of variable region genes. First, we …

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

G Bejerano, CB Lowe, N Ahituv, B King, A Siepel… - Nature, 2006 - nature.com
Hundreds of highly conserved distal cis-regulatory elements have been characterized so far
in vertebrate genomes. Many thousands more are predicted on the basis of comparative …

Evolution of microRNAs located within Hox gene clusters

A Tanzer, CT Amemiya, CB Kim… - Journal of Experimental …, 2005 - Wiley Online Library
MicroRNAs (miRNAs) form an abundant class of non‐coding RNA genes that have an
important function in post‐transcriptional gene regulation and in particular modulate the …

Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome

CT Amemiya, TP Powers… - Proceedings of the …, 2010 - National Acad Sciences
The living coelacanth is a lobe-finned fish that represents an early evolutionary departure
from the lineage that led to land vertebrates, and is of extreme interest scientifically. It has …

BAC libraries and comparative genomics of aquatic chordate species

T Miyake, CT Amemiya - Comparative Biochemistry and Physiology Part C …, 2004 - Elsevier
The bacterial artificial chromosome (BAC) system is useful for creating a representation of
the genomes of target species. The system is advantageous in that it can accommodate …

Coelacanth genome sequence reveals the evolutionary history of vertebrate genes

JP Noonan, J Grimwood, J Danke, J Schmutz… - Genome …, 2004 - genome.cshlp.org
The coelacanth is one of the nearest living relatives of tetrapods. However, a teleost species
such as zebrafish or Fugu is typically used as the outgroup in current tetrapod comparative …

Sequence and organization of coelacanth neurohypophysial hormone genes: evolutionary history of the vertebrate neurohypophysial hormone gene locus

PC Gwee, CT Amemiya, S Brenner… - BMC evolutionary biology, 2008 - Springer
Background The mammalian neurohypophysial hormones, vasopressin and oxytocin are
involved in osmoregulation and uterine smooth muscle contraction respectively. All jawed …

A family of conserved noncoding elements derived from an ancient transposable element

X **e, M Kamal, ES Lander - Proceedings of the National …, 2006 - National Acad Sciences
The evolutionary origin of the conserved noncoding elements (CNEs) in the human genome
remains poorly understood but may hold important clues to their biological functions. Here …

SCPP genes in the coelacanth: tissue mineralization genes shared by sarcopterygians

K Kawasaki, CT Amemiya - Journal of Experimental Zoology …, 2014 - Wiley Online Library
The coelacanth is the basal‐most extant sarcopterygian that has teeth and tooth‐like
structures, comprising bone, dentin, and enamel or enameloid. Formation of these tissues …

A Living Fossil in the Genome of a Living Fossil: Harbinger Transposons in the Coelacanth Genome

JJ Smith, K Sumiyama… - Molecular biology and …, 2012 - academic.oup.com
Emerging data from the coelacanth genome are beginning to shed light on the origin and
evolution of tetrapod genes and noncoding elements. Of particular relevance is the …