Tara Oceans: towards global ocean ecosystems biology
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …
change, is crucial. Here, we review the work of Tara Oceans, an international …
Globally consistent quantitative observations of planktonic ecosystems
In this paper we review the technologies available to make globally quantitative
observations of particles in general—and plankton in particular—in the world oceans, and …
observations of particles in general—and plankton in particular—in the world oceans, and …
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …
[HTML][HTML] Biosynthetic potential of the global ocean microbiome
Natural microbial communities are phylogenetically and metabolically diverse. In addition to
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
Marine DNA viral macro-and microdiversity from pole to pole
Microbes drive most ecosystems and are modulated by viruses that impact their lifespan,
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …
Microbial abundance, activity and population genomic profiling with mOTUs2
Metagenomic sequencing has greatly improved our ability to profile the composition of
environmental and host-associated microbial communities. However, the dependency of …
environmental and host-associated microbial communities. However, the dependency of …
Mirusviruses link herpesviruses to giant viruses
DNA viruses have a major influence on the ecology and evolution of cellular organisms,,–,
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold
The open-source de novo protein-level assembler, Plass (https://plass. mmseqs. com),
assembles six-frame-translated sequencing reads into protein sequences. It recovers 2–10 …
assembles six-frame-translated sequencing reads into protein sequences. It recovers 2–10 …
DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms
Dimethylsulfoxonium propionate (DMSOP) is a recently identified and abundant marine
organosulfur compound with roles in oxidative stress protection, global carbon and sulfur …
organosulfur compound with roles in oxidative stress protection, global carbon and sulfur …