Tara Oceans: towards global ocean ecosystems biology

S Sunagawa, SG Acinas, P Bork, C Bowler… - Nature Reviews …, 2020 - nature.com
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …

Globally consistent quantitative observations of planktonic ecosystems

F Lombard, E Boss, AM Waite, M Vogt, J Uitz… - Frontiers in Marine …, 2019 - frontiersin.org
In this paper we review the technologies available to make globally quantitative
observations of particles in general—and plankton in particular—in the world oceans, and …

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome

AA Zayed, JM Wainaina, G Dominguez-Huerta… - Science, 2022 - science.org
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …

[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages

U Neri, YI Wolf, S Roux, AP Camargo, B Lee… - Cell, 2022 - cell.com
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …

[HTML][HTML] Biosynthetic potential of the global ocean microbiome

L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich… - Nature, 2022 - nature.com
Natural microbial communities are phylogenetically and metabolically diverse. In addition to
underexplored organismal groups, this diversity encompasses a rich discovery potential for …

Marine DNA viral macro-and microdiversity from pole to pole

AC Gregory, AA Zayed, N Conceição-Neto… - Cell, 2019 - cell.com
Microbes drive most ecosystems and are modulated by viruses that impact their lifespan,
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …

Microbial abundance, activity and population genomic profiling with mOTUs2

A Milanese, DR Mende, L Paoli, G Salazar… - Nature …, 2019 - nature.com
Metagenomic sequencing has greatly improved our ability to profile the composition of
environmental and host-associated microbial communities. However, the dependency of …

Mirusviruses link herpesviruses to giant viruses

M Gaïa, L Meng, E Pelletier, P Forterre, C Vanni… - Nature, 2023 - nature.com
DNA viruses have a major influence on the ecology and evolution of cellular organisms,,–,
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …

Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold

M Steinegger, M Mirdita, J Söding - Nature methods, 2019 - nature.com
The open-source de novo protein-level assembler, Plass (https://plass. mmseqs. com),
assembles six-frame-translated sequencing reads into protein sequences. It recovers 2–10 …

DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms

O Carrión, CY Li, M Peng, J Wang, G Pohnert… - Nature …, 2023 - nature.com
Dimethylsulfoxonium propionate (DMSOP) is a recently identified and abundant marine
organosulfur compound with roles in oxidative stress protection, global carbon and sulfur …