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Role of RNA modifications in cancer
Specific chemical modifications of biological molecules are an efficient way of regulating
molecular function, and a plethora of downstream signalling pathways are influenced by the …
molecular function, and a plethora of downstream signalling pathways are influenced by the …
Codon optimality, bias and usage in translation and mRNA decay
G Hanson, J Coller - Nature reviews Molecular cell biology, 2018 - nature.com
The advent of ribosome profiling and other tools to probe mRNA translation has revealed
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing
Transfer RNAs (tRNAs) play a central role in protein translation. Studying them has been
difficult in part because a simple method to simultaneously quantify their abundance and …
difficult in part because a simple method to simultaneously quantify their abundance and …
METTL1-mediated m7G modification of Arg-TCT tRNA drives oncogenic transformation
The emerging" epitranscriptomics" field is providing insights into the biological and
pathological roles of different RNA modifications. The RNA methyltransferase METTL1 …
pathological roles of different RNA modifications. The RNA methyltransferase METTL1 …
The RNA modification landscape in human disease
RNA modifications have been historically considered as fine-tuning chemo-structural
features of infrastructural RNAs, such as rRNAs, tRNAs, and snoRNAs. This view has …
features of infrastructural RNAs, such as rRNAs, tRNAs, and snoRNAs. This view has …
tRNA dysregulation and disease
EA Orellana, E Siegal, RI Gregory - Nature Reviews Genetics, 2022 - nature.com
Abstract tRNAs are key adaptor molecules that decipher the genetic code during translation
of mRNAs in protein synthesis. In contrast to the traditional view of tRNAs as ubiquitously …
of mRNAs in protein synthesis. In contrast to the traditional view of tRNAs as ubiquitously …
Synonymous but not silent: the codon usage code for gene expression and protein folding
Codon usage bias, the preference for certain synonymous codons, is found in all genomes.
Although synonymous mutations were previously thought to be silent, a large body of …
Although synonymous mutations were previously thought to be silent, a large body of …
Cells alter their tRNA abundance to selectively regulate protein synthesis during stress conditions
Decoding the information in mRNA during protein synthesis relies on tRNA adaptors, the
abundance of which can affect the decoding rate and translation efficiency. To determine …
abundance of which can affect the decoding rate and translation efficiency. To determine …
tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes
Summary tRNA is the most extensively modified RNA in cells. On average, a bacterial tRNA
contains 8 modifications per molecule and a eukaryotic tRNA contains 13 modifications per …
contains 8 modifications per molecule and a eukaryotic tRNA contains 13 modifications per …
m3C32 tRNA modification controls serine codon-biased mRNA translation, cell cycle, and DNA-damage response
The epitranscriptome includes a diversity of RNA modifications that influence gene
expression. N3-methylcytidine (m3C) mainly occurs in the anticodon loop (position C32) of …
expression. N3-methylcytidine (m3C) mainly occurs in the anticodon loop (position C32) of …