AI Methods for Antimicrobial Peptides: Progress and Challenges
Antimicrobial peptides (AMPs) are promising candidates to combat multidrug‐resistant
pathogens. However, the high cost of extensive wet‐lab screening has made AI methods for …
pathogens. However, the high cost of extensive wet‐lab screening has made AI methods for …
AI-driven inverse design of materials: Past, present and future
XQ Han, XD Wang, MY Xu, Z Feng, BW Yao… - Chinese Physics …, 2024 - iopscience.iop.org
The discovery of advanced materials is the cornerstone of human technological
development and progress. The structures of materials and their corresponding properties …
development and progress. The structures of materials and their corresponding properties …
Improving equivariant graph neural networks on large geometric graphs via virtual nodes learning
Equivariant Graph Neural Networks (GNNs) have made remarkable success in a variety of
scientific applications. However, existing equivariant GNNs encounter the efficiency issue for …
scientific applications. However, existing equivariant GNNs encounter the efficiency issue for …
Crystalline material discovery in the era of artificial intelligence
Crystalline materials, with their symmetrical and periodic structures, possess a diverse array
of properties and have been widely used in various fields, ranging from electronic devices to …
of properties and have been widely used in various fields, ranging from electronic devices to …
Scalable crystal structure relaxation using an iteration-free deep generative model with uncertainty quantification
In computational molecular and materials science, determining equilibrium structures is the
crucial first step for accurate subsequent property calculations. However, the recent …
crucial first step for accurate subsequent property calculations. However, the recent …
Efficient equivariant model for machine learning interatomic potentials
In modern computational materials, machine learning has shown the capability to predict
interatomic potentials, thereby supporting and accelerating conventional molecular …
interatomic potentials, thereby supporting and accelerating conventional molecular …
Graph Neural Network-Based Molecular Property Prediction with Patch Aggregation
Graph neural networks (GNNs) have emerged as powerful tools for quantum chemical
property prediction, leveraging the inherent graph structure of molecular systems. GNNs …
property prediction, leveraging the inherent graph structure of molecular systems. GNNs …
Scaling Graph Neural Networks to Large Proteins
Graph neural network (GNN) architectures have emerged as promising force field models,
exhibiting high accuracy in predicting complex energies and forces based on atomic …
exhibiting high accuracy in predicting complex energies and forces based on atomic …
Learning local equivariant representations for quantum operators
Predicting quantum operator matrices such as Hamiltonian, overlap, and density matrices in
the density functional theory (DFT) framework is crucial for material science. Current …
the density functional theory (DFT) framework is crucial for material science. Current …
Improved and Interpretable Prediction of Cytochrome P450-Mediated Metabolism by Molecule-Level Graph Modeling and Subgraph Information Bottlenecks
Y Li, QW Xu, GL Jian, XL Zhang… - Journal of Chemical …, 2024 - ACS Publications
Accurately identifying sites of metabolism (SoM) mediated by cytochrome P450 (CYP)
enzymes, which are responsible for drug metabolism in the body, is critical in the early stage …
enzymes, which are responsible for drug metabolism in the body, is critical in the early stage …