Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

J Zhou, Z He, Y Yang, Y Deng, SG Tringe… - MBio, 2015 - journals.asm.org
Understanding the structure, functions, activities and dynamics of microbial communities in
natural environments is one of the grand challenges of 21st century science. To address this …

Eukaryotic plankton diversity in the sunlit ocean

C De Vargas, S Audic, N Henry, J Decelle, F Mahé… - Science, 2015 - science.org
Marine plankton support global biological and geochemical processes. Surveys of their
biodiversity have hitherto been geographically restricted and have not accounted for the full …

Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing

R Massana, A Gobet, S Audic, D Bass… - Environmental …, 2015 - Wiley Online Library
Although protists are critical components of marine ecosystems, they are still poorly
characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist …

Censusing marine eukaryotic diversity in the twenty-first century

M Leray, N Knowlton - … of the Royal Society B: Biological …, 2016 - royalsocietypublishing.org
The ocean constitutes one of the vastest and richest biomes on our planet. Most recent
estimations, all based on indirect approaches, suggest that there are millions of marine …

Perspectives from ten years of protist studies by high‐throughput metabarcoding

L Santoferrara, F Burki, S Filker… - Journal of Eukaryotic …, 2020 - Wiley Online Library
During the last decade, high‐throughput metabarcoding became routine for analyzing
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …

Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform

J Choi, JS Park - Scientific Reports, 2020 - nature.com
Illumina sequencing is a representative tool for understanding the massive diversity of
microbial eukaryotes in natural ecosystems. Here, we investigated the eukaryotic community …

Diversity and ecology of Radiolaria in modern oceans

T Biard - Environmental Microbiology, 2022 - Wiley Online Library
Among the many inhabitants of planktonic communities, several lineages have
biomineralized intricate skeletons. These have existed for millions of years and include the …

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform

C Wen, L Wu, Y Qin, JD Van Nostrand, D Ning, B Sun… - PloS one, 2017 - journals.plos.org
Illumina's MiSeq has become the dominant platform for gene amplicon sequencing in
microbial ecology studies; however, various technical concerns, such as reproducibility, still …

The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation

W Zhang, Y Pan, J Yang, H Chen… - Environmental …, 2018 - Wiley Online Library
Benthic microeukaryotes are key ecosystem drivers in marine sandy beaches, an important
and dynamic environment; however, little is known about their diversity and biogeography …