Crop phenomics and high-throughput phenoty**: past decades, current challenges, and future perspectives

W Yang, H Feng, X Zhang, J Zhang, JH Doonan… - Molecular plant, 2020 - cell.com
Since whole-genome sequencing of many crops has been achieved, crop functional
genomics studies have stepped into the big-data and high-throughput era. However …

[HTML][HTML] High-throughput phenoty**: Breaking through the bottleneck in future crop breeding

P Song, J Wang, X Guo, W Yang, C Zhao - The Crop Journal, 2021 - Elsevier
With the rapid development of genetic analysis techniques and crop population size,
phenoty** has become the bottleneck restricting crop breeding. Breaking through this …

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

S Jung, T Lee, CH Cheng, K Buble… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Genome Database for Rosaceae (GDR, https://www. rosaceae. org) is an
integrated web-based community database resource providing access to publicly available …

A physio-morphological trait-based approach for breeding drought tolerant wheat

K Khadka, HJ Earl, MN Raizada, A Navabi - Frontiers in plant science, 2020 - frontiersin.org
In the past, there have been drought events in different parts of the world, which have
negatively influenced the productivity and production of various crops including wheat …

[HTML][HTML] New sensors and data-driven approaches—A path to next generation phenomics

T Roitsch, L Cabrera-Bosquet, A Fournier, K Ghamkhar… - Plant Science, 2019 - Elsevier
Abstract At the 4th International Plant Phenoty** Symposium meeting of the International
Plant Phenoty** Network (IPPN) in 2016 at CIMMYT in Mexico, a workshop was convened …

[HTML][HTML] CaMV35S promoter–A plant biology and biotechnology workhorse in the era of synthetic biology

SC Amack, MS Antunes - Current Plant Biology, 2020 - Elsevier
Transgene over-expression has fueled many important plant biology discoveries in the last
40 years, as well as the development of economically important transgenic crop varieties …

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

MK Tello-Ruiz, S Naithani, P Gupta… - Nucleic Acids …, 2021 - academic.oup.com
Abstract Gramene (http://www. gramene. org), a knowledgebase founded on comparative
functional analyses of genomic and pathway data for model plants and major crops …

Computer vision-based phenoty** for improvement of plant productivity: a machine learning perspective

K Mochida, S Koda, K Inoue, T Hirayama… - …, 2019 - academic.oup.com
Employing computer vision to extract useful information from images and videos is
becoming a key technique for identifying phenotypic changes in plants. Here, we review the …

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals

X Liu, D Tian, C Li, B Tang, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract GWAS Atlas (https://ngdc. cncb. ac. cn/gwas/) is a manually curated resource of
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …

Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …