The dynamic history of prokaryotic phyla: discovery, diversity and division
MJ Pallen - International Journal of Systematic and …, 2024 - microbiologyresearch.org
Here, I review the dynamic history of prokaryotic phyla. Following leads set by Darwin,
Haeckel and Woese, the concept of phylum has evolved from a group sharing common …
Haeckel and Woese, the concept of phylum has evolved from a group sharing common …
A metagenomic perspective on the microbial prokaryotic genome census
Following 30 years of sequencing, we assessed the phylogenetic diversity (PD) of> 1.5
million microbial genomes in public databases, including metagenome-assembled …
million microbial genomes in public databases, including metagenome-assembled …
From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology
Soil microbiomes are heterogeneous, complex microbial communities. Metagenomic
analysis is generating vast amounts of data, creating immense challenges in sequence …
analysis is generating vast amounts of data, creating immense challenges in sequence …
GenomeFace: a deep learning-based metagenome binner trained on 43,000 microbial genomes
Metagenomic binning, the process of grou** DNA sequences into taxonomic units, is
critical for understanding the functions, interactions, and evolutionary dynamics of microbial …
critical for understanding the functions, interactions, and evolutionary dynamics of microbial …
Recovery of highly contiguous genomes from complex terrestrial habitats reveals over 15,000 novel prokaryotic species and expands characterization of soil and …
Genomes are fundamental to understanding microbial ecology and evolution. The
emergence of high-throughput, long-read DNA sequencing has enabled recovery of …
emergence of high-throughput, long-read DNA sequencing has enabled recovery of …
Deep long-read metagenomic sequencing reveals niche differentiation in carbon cycling potential between benthic and planktonic microbial populations
Coastal marine sediments function as large-scale natural biocatalytic filters, remineralizing
and transforming organic matter. Benthic microbiomes exhibit remarkable temporal stability …
and transforming organic matter. Benthic microbiomes exhibit remarkable temporal stability …