Nanotechnology for COVID-19: therapeutics and vaccine research

G Chauhan, MJ Madou, S Kalra, V Chopra, D Ghosh… - ACS …, 2020 - ACS Publications
The current global health threat by the novel coronavirus disease 2019 (COVID-19) requires
an urgent deployment of advanced therapeutic options available. The role of …

The state of the art in enhancing trust in machine learning models with the use of visualizations

A Chatzimparmpas, RM Martins, I Jusufi… - Computer Graphics …, 2020 - Wiley Online Library
Abstract Machine learning (ML) models are nowadays used in complex applications in
various domains, such as medicine, bioinformatics, and other sciences. Due to their black …

Transformer-CNN: Swiss knife for QSAR modeling and interpretation

P Karpov, G Godin, IV Tetko - Journal of cheminformatics, 2020 - Springer
We present SMILES-embeddings derived from the internal encoder state of a Transformer
[1] model trained to canonize SMILES as a Seq2Seq problem. Using a CharNN [2] …

Recent advances in the prediction of pharmacokinetics properties in drug design studies: a review

SQ Pantaleão, PO Fernandes, JE Gonçalves… - …, 2022 - Wiley Online Library
This review presents the main aspects related to pharmacokinetic properties, which are
essential for the efficacy and safety of drugs. This topic is very important because the …

[BUKU][B] Applied predictive modeling

M Kuhn, K Johnson - 2013 - Springer
This is a book on data analysis with a specific focus on the practice of predictive modeling.
The term predictive modeling may stir associations such as machine learning, pattern …

Wavefunction and reactivity study of benzo [a] pyrene diol epoxide and its enantiomeric forms

T Lu, S Manzetti - Structural Chemistry, 2014 - Springer
Benzo [a] pyrene is a known carcinogen, which derives from fossil fuel combustion, cigarette
smoke, and generic biomass combustion including traffic emissions. This potent carcinogen …

Out-of-the-box deep learning prediction of pharmaceutical properties by broadly learned knowledge-based molecular representations

WX Shen, X Zeng, F Zhu, YL Wang, C Qin… - Nature Machine …, 2021 - nature.com
Successful deep learning critically depends on the representation of the learned objects.
Recent state-of-the-art pharmaceutical deep learning models successfully exploit graph …

A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility

B Tang, ST Kramer, M Fang, Y Qiu, Z Wu… - Journal of …, 2020 - Springer
Efficient and accurate prediction of molecular properties, such as lipophilicity and solubility,
is highly desirable for rational compound design in chemical and pharmaceutical industries …

In silico ADME-Tox modeling: progress and prospects

S Alqahtani - Expert opinion on drug metabolism & toxicology, 2017 - Taylor & Francis
Introduction: Although significant progress has been made in high-throughput screening of
absorption, distribution, metabolism and excretion, and toxicity (ADME-Tox) properties in …

Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information

I Sushko, S Novotarskyi, R Körner, AK Pandey… - Journal of computer …, 2011 - Springer
Abstract The Online Chemical Modeling Environment is a web-based platform that aims to
automate and simplify the typical steps required for QSAR modeling. The platform consists of …