Integrating fossil observations into phylogenetics using the fossilized birth–death model

AM Wright, DW Bapst, J Barido-Sottani… - Annual Review of …, 2022 - annualreviews.org
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …

Extant timetrees are consistent with a myriad of diversification histories

S Louca, MW Pennell - Nature, 2020 - nature.com
Time-calibrated phylogenies of extant species (referred to here as 'extant timetrees') are
widely used for estimating diversification dynamics. However, there has been considerable …

Using the fossil record to evaluate timetree timescales

CR Marshall - Frontiers in Genetics, 2019 - frontiersin.org
The fossil and geologic records provide the primary data used to established absolute
timescales for timetrees. For the paleontological evaluation of proposed timetree timescales …

Fossil data support a pre-Cretaceous origin of flowering plants

D Silvestro, CD Bacon, W Ding, Q Zhang… - Nature ecology & …, 2021 - nature.com
Flowering plants (angiosperms) are the most diverse of all land plants, becoming abundant
in the Cretaceous and achieving dominance in the Cenozoic. However, the exact timing of …

The dynamics of stem and crown groups

GE Budd, RP Mann - Science Advances, 2020 - science.org
The fossil record of the origins of major groups such as animals and birds has generated
considerable controversy, especially when it conflicts with timings based on molecular clock …

Late Cretaceous ammonoids show that drivers of diversification are regionally heterogeneous

JT Flannery-Sutherland, CD Crossan, CE Myers… - Nature …, 2024 - nature.com
Palaeontologists have long sought to explain the diversification of individual clades to whole
biotas at global scales. Advances in our understanding of the spatial distribution of the fossil …

Investigating biotic interactions in deep time

D Fraser, LC Soul, AB Tóth, MA Balk, JT Eronen… - Trends in Ecology & …, 2021 - cell.com
Recent renewed interest in using fossil data to understand how biotic interactions have
shaped the evolution of life is challenging the widely held assumption that long-term climate …

Hominin brain size increase has emerged from within-species encephalization

TA Püschel, SL Nicholson, J Baker, RA Barton… - Proceedings of the …, 2024 - pnas.org
The fact that rapid brain size increase was clearly a key aspect of human evolution has
prompted many studies focusing on this phenomenon, and many suggestions as to the …

Simpson's tachytely or bradytely? The importance of quantifying rate uncertainty

R Zenil‐Ferguson, LH Liow - Methods in Ecology and Evolution, 2025 - Wiley Online Library
The spectacular variation in species forms and richness across space and time can be
explored using sophisticated and powerful tools recently developed by evolutionary …

Closing the gap between palaeontological and neontological speciation and extinction rate estimates

D Silvestro, RCM Warnock, A Gavryushkina… - Nature …, 2018 - nature.com
Measuring the pace at which speciation and extinction occur is fundamental to
understanding the origin and evolution of biodiversity. Both the fossil record and molecular …