Synthesis of phylogeny and taxonomy into a comprehensive tree of life
Reconstructing the phylogenetic relationships that unite all lineages (the tree of life) is a
grand challenge. The paucity of homologous character data across disparately related …
grand challenge. The paucity of homologous character data across disparately related …
Badges to acknowledge open practices: A simple, low-cost, effective method for increasing transparency
Beginning January 2014, Psychological Science gave authors the opportunity to signal
open data and materials if they qualified for badges that accompanied published articles …
open data and materials if they qualified for badges that accompanied published articles …
rotl: an R package to interact with the Open Tree of Life data
While phylogenies have been getting easier to build, it has been difficult to reuse, combine
and synthesize the information they provide because published trees are often only …
and synthesize the information they provide because published trees are often only …
Navigating the unfolding open data landscape in ecology and evolution
Open access to data is revolutionizing the sciences. To allow ecologists and evolutionary
biologists to confidently find and use the existing data, we provide an overview of the …
biologists to confidently find and use the existing data, we provide an overview of the …
Data sharing: An open mind on open data
V Gewin - Nature, 2016 - nature.com
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Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data
S Xu, L Li, X Luo, M Chen, W Tang, L Zhan, Z Dai… - IMeta, 2022 - Wiley Online Library
While phylogenetic trees and associated data have been getting easier to generate, it has
been difficult to reuse, combine, and synthesize the information they provided, because …
been difficult to reuse, combine, and synthesize the information they provided, because …
Data sharing in PLOS ONE: an analysis of data availability statements
A number of publishers and funders, including PLOS, have recently adopted policies
requiring researchers to share the data underlying their results and publications. Such …
requiring researchers to share the data underlying their results and publications. Such …
Public data archiving in ecology and evolution: how well are we doing?
Policies that mandate public data archiving (PDA) successfully increase accessibility to data
underlying scientific publications. However, is the data quality sufficient to allow reuse and …
underlying scientific publications. However, is the data quality sufficient to allow reuse and …
An r package and online resource for macroevolutionary studies using the ray‐finned fish tree of life
Comprehensive, time‐scaled phylogenies provide a critical resource for many questions in
ecology, evolution and biodiversity. Methodological advances have increased the breadth of …
ecology, evolution and biodiversity. Methodological advances have increased the breadth of …
Reproducible and reusable research: are journal data sharing policies meeting the mark?
Background There is wide agreement in the biomedical research community that research
data sharing is a primary ingredient for ensuring that science is more transparent and …
data sharing is a primary ingredient for ensuring that science is more transparent and …