Applications of machine learning in human microbiome studies: a review on feature selection, biomarker identification, disease prediction and treatment
LJ Marcos-Zambrano… - Frontiers in …, 2021 - frontiersin.org
The number of microbiome-related studies has notably increased the availability of data on
human microbiome composition and function. These studies provide the essential material …
human microbiome composition and function. These studies provide the essential material …
Low-abundant microorganisms: the human microbiome's dark matter, a sco** review
Research on the human microbiome has mainly been restricted to the identification of most
abundant microbiota associated with health or disease. Their abundance may reflect their …
abundant microbiota associated with health or disease. Their abundance may reflect their …
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data
Abstract 16S ribosomal RNA-based analysis is the established standard for elucidating the
composition of microbial communities. While short-read 16S rRNA analyses are largely …
composition of microbial communities. While short-read 16S rRNA analyses are largely …
The newest Oxford Nanopore R10. 4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling
T Zhang, H Li, S Ma, J Cao, H Liao… - Applied and …, 2023 - Am Soc Microbiol
The long-read amplicon provides a species-level solution for the community. With the
improvement of nanopore flowcells, the accuracy of Oxford Nanopore Technologies (ONT) …
improvement of nanopore flowcells, the accuracy of Oxford Nanopore Technologies (ONT) …
Nanopore is preferable over Illumina for 16S amplicon sequencing of the gut microbiota when species-level taxonomic classification, accurate estimation of richness …
M Szoboszlay, L Schramm, D Pinzauti, J Scerri… - Microorganisms, 2023 - mdpi.com
Nanopore sequencing is a promising technology used for 16S rRNA gene amplicon
sequencing as it can provide full-length 16S reads and has a low up-front cost that allows …
sequencing as it can provide full-length 16S reads and has a low up-front cost that allows …
Metagenomics: a tool for exploring key microbiome with the potentials for improving sustainable agriculture
Microorganisms are immense in nature and exist in every imaginable ecological niche,
performing a wide range of metabolic processes. Unfortunately, using traditional …
performing a wide range of metabolic processes. Unfortunately, using traditional …
Dysbiosis of oral microbiota during oral squamous cell carcinoma development
Infection with specific pathogens and alterations in tissue commensal microbial composition
are intricately associated with the development of many human cancers. Likewise, dysbiosis …
are intricately associated with the development of many human cancers. Likewise, dysbiosis …
DNA metabarcoding for the characterization of terrestrial microbiota—pitfalls and solutions
Soil-borne microbes are major ecological players in terrestrial environments since they cycle
organic matter, channel nutrients across trophic levels and influence plant growth and …
organic matter, channel nutrients across trophic levels and influence plant growth and …
Molecular methods for pathogenic bacteria detection and recent advances in wastewater analysis
With increasing concerns about public health and the development of molecular techniques,
new detection tools and the combination of existing approaches have increased the abilities …
new detection tools and the combination of existing approaches have increased the abilities …
Metagenomics in bioflocs and their effects on gut microbiome and immune responses in Pacific white shrimp
Biofloc systems generate and accumulate microbial aggregates known as bioflocs. The
presence of bioflocs has been shown to change gut bacterial diversity and stimulate innate …
presence of bioflocs has been shown to change gut bacterial diversity and stimulate innate …