From GWAS to gene: transcriptome-wide association studies and other methods to functionally understand GWAS discoveries
Since their inception, genome-wide association studies (GWAS) have identified more than a
hundred thousand single nucleotide polymorphism (SNP) loci that are associated with …
hundred thousand single nucleotide polymorphism (SNP) loci that are associated with …
The goldmine of GWAS summary statistics: a systematic review of methods and tools
Genome-wide association studies (GWAS) have revolutionized our understanding of the
genetic architecture of complex traits and diseases. GWAS summary statistics have become …
genetic architecture of complex traits and diseases. GWAS summary statistics have become …
[HTML][HTML] Cross-validation of SARS-CoV-2 responses in kidney organoids and clinical populations
Kidneys are critical target organs of COVID-19, but susceptibility and responses to infection
remain poorly understood. Here, we combine SARS-CoV-2 variants with genome-edited …
remain poorly understood. Here, we combine SARS-CoV-2 variants with genome-edited …
Aggregating multiple expression prediction models improves the power of transcriptome-wide association studies
Transcriptome-wide association study (TWAS) is an important integrative method for
identifying genes that are causally associated with phenotypes. A key step of TWAS involves …
identifying genes that are causally associated with phenotypes. A key step of TWAS involves …
ADELLE: A global testing method for Trans-eQTL map**
T Akinbiyi, MS McPeek, M Abney - PLoS genetics, 2025 - journals.plos.org
Understanding the genetic regulatory mechanisms of gene expression is an ongoing
challenge. Genetic variants that are associated with expression levels are readily identified …
challenge. Genetic variants that are associated with expression levels are readily identified …
The Cauchy combination test under arbitrary dependence structures
M Long, Z Li, W Zhang, Q Li - The American Statistician, 2023 - Taylor & Francis
Combining individual p-values to perform an overall test is often encountered in statistical
applications. The Cauchy combination test (CCT)(Journal of the American Statistical …
applications. The Cauchy combination test (CCT)(Journal of the American Statistical …
Detecting associated genes for complex traits shared across East Asian and European populations under the framework of composite null hypothesis testing
J Qiao, Z Shao, Y Wu, P Zeng, T Wang - Journal of Translational Medicine, 2022 - Springer
Background Detecting trans-ethnic common associated genetic loci can offer important
insights into shared genetic components underlying complex diseases/traits across diverse …
insights into shared genetic components underlying complex diseases/traits across diverse …
Detection of genetic overlap between rheumatoid arthritis and systemic lupus erythematosus using GWAS summary statistics
H Lu, J Zhang, Z Jiang, M Zhang, T Wang… - Frontiers in …, 2021 - frontiersin.org
Background Clinical and epidemiological studies have suggested systemic lupus
erythematosus (SLE) and rheumatoid arthritis (RA) are comorbidities and common genetic …
erythematosus (SLE) and rheumatoid arthritis (RA) are comorbidities and common genetic …
Ranking antibody binding epitopes and proteins across samples from whole proteome tiled linear peptides
Introduction Ultradense peptide binding arrays that can probe millions of linear peptides
comprising the entire proteomes of human or mouse, or hundreds of thousands of microbes …
comprising the entire proteomes of human or mouse, or hundreds of thousands of microbes …
Multiple-tissue integrative transcriptome-wide association studies discovered new genes associated with amyotrophic lateral sclerosis
L **ao, Z Yuan, S **, T Wang, S Huang… - Frontiers in genetics, 2020 - frontiersin.org
Genome-wide association studies (GWAS) have identified multiple causal genes associated
with amyotrophic lateral sclerosis (ALS); however, the genetic architecture of ALS remains …
with amyotrophic lateral sclerosis (ALS); however, the genetic architecture of ALS remains …