Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

Effects of selection at linked sites on patterns of genetic variability

B Charlesworth, JD Jensen - Annual review of ecology …, 2021 - annualreviews.org
Patterns of variation and evolution at a given site in a genome can be strongly influenced by
the effects of selection at genetically linked sites. In particular, the recombination rates of …

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula …

R Burri, A Nater, T Kawakami, CF Mugal… - Genome …, 2015 - genome.cshlp.org
Speciation is a continuous process during which genetic changes gradually accumulate in
the genomes of diverging species. Recent studies have documented highly heterogeneous …

Coevolution between transposable elements and recombination

TV Kent, J Uzunović, SI Wright - … Transactions of the …, 2017 - royalsocietypublishing.org
One of the most striking patterns of genome structure is the tight, typically negative,
association between transposable elements (TEs) and meiotic recombination rates. While …

Population genetics from 1966 to 2016

B Charlesworth, D Charlesworth - Heredity, 2017 - nature.com
We describe the astonishing changes and progress that have occurred in the field of
population genetics over the past 50 years, slightly longer than the time since the first …

High mutation rates limit evolutionary adaptation in Escherichia coli

K Sprouffske, J Aguilar-Rodriguez, P Sniegowski… - PLoS …, 2018 - journals.plos.org
Mutation is fundamental to evolution, because it generates the genetic variation on which
selection can act. In nature, genetic changes often increase the mutation rate in systems that …

Sex chromosome degeneration by regulatory evolution

T Lenormand, F Fyon, E Sun, D Roze - Current Biology, 2020 - cell.com
In many species, the Y (or W) sex chromosome is degenerate. Current theory proposes that
this degeneration follows the arrest of recombination and results from the accumulation of …

Whole‐genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine‐scale recombination rate variation in …

T Kawakami, CF Mugal, A Suh, A Nater… - Molecular …, 2017 - Wiley Online Library
Recombination rate is heterogeneous across the genome of various species and so are
genetic diversity and differentiation as a consequence of linked selection. However, we still …

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes

Q Rougemont, PA Gagnaire, C Perrier… - Molecular …, 2017 - Wiley Online Library
Understanding the evolutionary mechanisms generating parallel genomic divergence
patterns among replicate ecotype pairs remains an important challenge in speciation …

Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies

JM Comeron - … Transactions of the Royal Society B …, 2017 - royalsocietypublishing.org
The consequences of selection at linked sites are multiple and widespread across the
genomes of most species. Here, I first review the main concepts behind models of selection …