Next-generation sequencing in oncology: genetic diagnosis, risk prediction and cancer classification

R Kamps, RD Brandão, BJ van den Bosch… - International journal of …, 2017‏ - mdpi.com
Next-generation sequencing (NGS) technology has expanded in the last decades with
significant improvements in the reliability, sequencing chemistry, pipeline analyses, data …

Membrane and nuclear estrogen receptor alpha actions: from tissue specificity to medical implications

JF Arnal, F Lenfant, R Metivier, G Flouriot… - Physiological …, 2017‏ - journals.physiology.org
Estrogen receptor alpha (ERα) has been recognized now for several decades as playing a
key role in reproduction and exerting functions in numerous nonreproductive tissues. In this …

Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro

MJ Dolan, M Therrien, S Jereb, T Kamath… - Nature …, 2023‏ - nature.com
Microglia, the macrophages of the brain parenchyma, are key players in neurodegenerative
diseases such as Alzheimer's disease. These cells adopt distinct transcriptional subtypes …

Tissue-resident memory CD8+ T cells possess unique transcriptional, epigenetic and functional adaptations to different tissue environments

JT Crowl, M Heeg, A Ferry, JJ Milner, KD Omilusik… - Nature …, 2022‏ - nature.com
Tissue-resident memory T cells (TRM cells) provide protective immunity, but the
contributions of specific tissue environments to TRM cell differentiation and homeostasis are …

Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma

Y Sun, P Wu, Z Zhang, Z Wang, K Zhou, M Song, Y Ji… - Cancer Cell, 2024‏ - cell.com
Comprehensive molecular analyses of metastatic hepatocellular carcinoma (HCC) are
lacking. Here, we generate multi-omic profiling of 257 primary and 176 metastatic regions …

Exon junction complex shapes the m6A epitranscriptome

X Yang, R Triboulet, Q Liu, E Sendinc… - Nature …, 2022‏ - nature.com
Abstract N6-methyladenosine (m6A), the most abundant modification of mRNA, is essential
for normal development and dysregulation promotes cancer. m6A is highly enriched in the …

RNA m6A regulates transcription via DNA demethylation and chromatin accessibility

S Deng, J Zhang, J Su, Z Zuo, L Zeng, K Liu, Y Zheng… - Nature …, 2022‏ - nature.com
Transcriptional regulation, which integrates chromatin accessibility, transcription factors and
epigenetic modifications, is crucial for establishing and maintaining cell identity. The …

Tumors exploit FTO-mediated regulation of glycolytic metabolism to evade immune surveillance

Y Liu, G Liang, H Xu, W Dong, Z Dong, Z Qiu, Z Zhang… - Cell metabolism, 2021‏ - cell.com
The ever-increasing understanding of the complexity of factors and regulatory layers that
contribute to immune evasion facilitates the development of immunotherapies. However, the …

Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation

X Liu, XM Bie, X Lin, M Li, H Wang, X Zhang, Y Yang… - Nature Plants, 2023‏ - nature.com
Genetic transformation is important for gene functional study and crop improvement.
However, it is less effective in wheat. Here we employed a multi-omic analysis strategy to …

Polyamine metabolism is a central determinant of helper T cell lineage fidelity

DJ Puleston, F Baixauli, DE Sanin, J Edwards-Hicks… - Cell, 2021‏ - cell.com
Polyamine synthesis represents one of the most profound metabolic changes during T cell
activation, but the biological implications of this are scarcely known. Here, we show that …