Advances in methods for tRNA sequencing and quantification

NH Padhiar, U Katneni, AA Komar, Y Motorin… - Trends in Genetics, 2024 - cell.com
In the past decade tRNA sequencing (tRNA-seq) has attracted considerable attention as an
important tool for the development of novel approaches to quantify highly modified tRNA …

Extracellular vesicles, RNA sequencing, and bioinformatic analyses: Challenges, solutions, and recommendations

RT Miceli, TY Chen, Y Nose, S Tichkule… - Journal of …, 2024 - Wiley Online Library
Extracellular vesicles (EVs) are heterogeneous entities secreted by cells into their
microenvironment and systemic circulation. Circulating EVs carry functional small RNAs and …

Benchmarking of five NGS map** tools for the reference alignment of bacterial outer membrane vesicles-associated small RNAs

B Banović Đeri, S Nešić, I Vićić, J Samardžić… - Frontiers in …, 2024 - frontiersin.org
Advances in small RNAs (sRNAs)-related studies have posed a challenge for NGS-related
bioinformatics, especially regarding the correct map** of sRNAs. Depending on the …

Intraindividual variability of semen quality, proteome, and sncRNA profiles in a healthy cohort of young adults

O Sergeyev, V Bezuglov, N Soloveva, L Smigulina… - …, 2024 - Wiley Online Library
Background Within‐subject variability of semen parameters and molecular components of
ejaculates in young men remains poorly understood. Objectives To investigate …

Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms

A Budkina, YA Medvedeva, A Stupnikov - International Journal of …, 2023 - mdpi.com
Differential methylation (DM) is actively recruited in different types of fundamental and
translational studies. Currently, microarray-and NGS-based approaches for methylation …

reanalyzerGSE: tackling the everlasting lack of reproducibility and reanalyses in transcriptomics

JL Ruiz, LC Terrón-Camero, J Castillo-González… - bioRxiv, 2023 - biorxiv.org
In the current context of transcriptomics democratization, there is an unprecedented surge in
the number of studies and datasets. However, advances are hampered by aspects such as …

[HTML][HTML] Биоинформатический подход к обработке данных высокопроизводительного секвенирования молекул малых РНК

АА Жарикова, ЮВ Вяткин, АВ Киселева… - Кардиоваскулярная …, 2024 - cyberleninka.ru
Высокопроизводительное секвенирование молекул малых РНК (рибонуклеиновых
кислот) широко применяют для поиска маркеров, характерных для различных …