Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Towards exhaustive community ecology via DNA metabarcoding

GF Ficetola, P Taberlet - Molecular Ecology, 2023 - Wiley Online Library
Exhaustive biodiversity data, covering all the taxa in an environment, would be fundamental
to understand how global changes influence organisms living at different trophic levels, and …

Quantifying biodiversity using eDNA from water bodies: General principles and recommendations for sampling designs

F Altermatt, L Carraro, M Antonetti, C Albouy… - Environmental …, 2023 - Wiley Online Library
Reliable and comparable estimates of biodiversity are the foundation for understanding
ecological systems and informing policy and decision‐making, especially in an era of …

An integrated spatio-temporal view of riverine biodiversity using environmental DNA metabarcoding

WB Perry, M Seymour, L Orsini, IB Jâms… - Nature …, 2024 - nature.com
Anthropogenically forced changes in global freshwater biodiversity demand more efficient
monitoring approaches. Consequently, environmental DNA (eDNA) analysis is enabling …

Detecting and analysing intraspecific genetic variation with eDNA: From population genetics to species abundance

KJ Andres, DM Lodge, SA Sethi, J Andrés - Molecular Ecology, 2023 - Wiley Online Library
Advancements in environmental DNA (eDNA) approaches have allowed for rapid and
efficient species detections in diverse environments. Although most eDNA research is …

eDNA metabarcoding enriches traditional trawl survey data for monitoring biodiversity in the marine environment

X He, NW Jeffery, RRE Stanley… - ICES Journal of …, 2023 - academic.oup.com
Abstract Marine Protected Areas require comprehensive monitoring to ensure objectives are
achieved; however, monitoring natural ecosystems at scale is challenged by the biodiversity …

Optimising sampling and analysis protocols in environmental DNA studies

A Buxton, E Matechou, J Griffin, A Diana… - Scientific Reports, 2021 - nature.com
Ecological surveys risk incurring false negative and false positive detections of the target
species. With indirect survey methods, such as environmental DNA, such error can occur at …

Mock community experiments can inform on the reliability of eDNA metabarcoding data: a case study on marine phytoplankton

N Marinchel, A Marchesini, D Nardi, M Girardi… - Scientific Reports, 2023 - nature.com
Environmental DNA metabarcoding is increasingly implemented in biodiversity monitoring,
including phytoplankton studies. Using 21 mock communities composed of seven unicellular …