A survey on the computational approaches to identify drug targets in the postgenomic era
YF Dai, XM Zhao - BioMed research international, 2015 - Wiley Online Library
Identifying drug targets plays essential roles in designing new drugs and combating
diseases. Unfortunately, our current knowledge about drug targets is far from …
diseases. Unfortunately, our current knowledge about drug targets is far from …
In silico assessment of adverse drug reactions and associated mechanisms
Highlights•Early assessment of adverse drug reactions (ADRs) requires knowledge of their
mechanisms.•Chemical and biological drug features can be used for assessment of …
mechanisms.•Chemical and biological drug features can be used for assessment of …
Comprehensive prediction of drug-protein interactions and side effects for the human proteome
Identifying unexpected drug-protein interactions is crucial for drug repurposing. We develop
a comprehensive proteome scale approach that predicts human protein targets and side …
a comprehensive proteome scale approach that predicts human protein targets and side …
Systematic drug repositioning for a wide range of diseases with integrative analyses of phenotypic and molecular data
Drug repositioning, or the application of known drugs to new indications, is a challenging
issue in pharmaceutical science. In this study, we developed a new computational method to …
issue in pharmaceutical science. In this study, we developed a new computational method to …
Prediction of drug side effects with transductive matrix co-completion
X Liang, Y Fu, L Qu, P Zhang, Y Chen - Bioinformatics, 2023 - academic.oup.com
Motivation Side effects of drugs could cause severe health problems and the failure of drug
development. Drug–target interactions are the basis for side effect production and are …
development. Drug–target interactions are the basis for side effect production and are …
Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets
AD Rouillard, MR Hurle, P Agarwal - PLoS Computational Biology, 2018 - journals.plos.org
Target selection is the first and pivotal step in drug discovery. An incorrect choice may not
manifest itself for many years after hundreds of millions of research dollars have been spent …
manifest itself for many years after hundreds of millions of research dollars have been spent …
Large-scale prediction of beneficial drug combinations using drug efficacy and target profiles
The identification of beneficial drug combinations is a challenging issue in pharmaceutical
and clinical research toward combinatorial drug therapy. In the present study, we developed …
and clinical research toward combinatorial drug therapy. In the present study, we developed …
Computational drug repositioning based on the relationships between substructure–indication
J Yang, D Zhang, L Liu, G Li, Y Cai… - Briefings in …, 2021 - academic.oup.com
At present, computational methods for drug repositioning are mainly based on the whole
structures of drugs, which limits the discovery of new functions due to the similarities …
structures of drugs, which limits the discovery of new functions due to the similarities …
Identifying protein features responsible for improved drug repurposing accuracies using the CANDO platform: Implications for drug design
Drug repurposing is a valuable tool for combating the slowing rates of novel therapeutic
discovery. The Computational Analysis of Novel Drug Opportunities (CANDO) platform …
discovery. The Computational Analysis of Novel Drug Opportunities (CANDO) platform …
Better understanding the phenotypic effects of drugs through shared targets in genetic disease networks
E Díaz-Santiago, AA Moya-García… - Frontiers in …, 2025 - frontiersin.org
Introduction Most drugs fail during development and there is a clear and unmet need for
approaches to better understand mechanistically how drugs exert both their intended and …
approaches to better understand mechanistically how drugs exert both their intended and …