Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

JA Lenstra, LF Groeneveld, H Eding… - Animal …, 2012 - Wiley Online Library
Genetic studies of livestock populations focus on questions of domestication, within‐and
among‐breed diversity, breed history and adaptive variation. In this review, we describe the …

Copy number variation in the genomes of domestic animals

A Clop, O Vidal, M Amills - Animal genetics, 2012 - Wiley Online Library
Copy number variation (CNV) might be one of the main contributors to phenotypic diversity
and evolutionary adaptation in animals and plants, employing a wide variety of mechanisms …

Design and characterization of a 52K SNP chip for goats

G Tosser-Klopp, P Bardou, O Bouchez, C Cabau… - PloS one, 2014 - journals.plos.org
The success of Genome Wide Association Studies in the discovery of sequence variation
linked to complex traits in humans has increased interest in high throughput SNP …

Genomic characteristics of cattle copy number variations

Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang… - BMC genomics, 2011 - Springer
Background Copy number variation (CNV) represents another important source of genetic
variation complementary to single nucleotide polymorphism (SNP). High-density SNP array …

The challenges and importance of structural variation detection in livestock

DM Bickhart, GE Liu - Frontiers in genetics, 2014 - frontiersin.org
Recent studies in humans and other model organisms have demonstrated that structural
variants (SVs) comprise a substantial proportion of variation among individuals of each …

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

Y Dong, X Zhang, M **e, B Arefnezhad, Z Wang… - BMC genomics, 2015 - Springer
Abstract Background Domestic goats (Capra hircus) have been selected to play an essential
role in agricultural production systems, since being domesticated from their wild progenitor …

Goat genomic resources: the search for genes associated with its economic traits

A Zonaed Siddiki, G Miah, MS Islam… - … Journal of Genomics, 2020 - Wiley Online Library
Goat plays a crucial role in human livelihoods, being a major source of meat, milk, fiber, and
hides, particularly under adverse climatic conditions. The goat genomics related to the …

[HTML][HTML] A first comparative map of copy number variations in the sheep genome

L Fontanesi, F Beretti, PL Martelli, M Colombo… - Genomics, 2011 - Elsevier
We carried out a cross species cattle–sheep array comparative genome hybridization
experiment to identify copy number variations (CNVs) in the sheep genome analysing ewes …

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array

J Liu, L Zhang, L Xu, H Ren, J Lu, X Zhang, S Zhang… - BMC genomics, 2013 - Springer
Background In recent years, genome-wide association studies have successfully uncovered
single-nucleotide polymorphisms (SNPs) associated with complex traits such as diseases …

CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

Y Gao, J Jiang, S Yang, Y Hou, GE Liu, S Zhang… - BMC genomics, 2017 - Springer
Abstract Background Copy number variations (CNVs) are important and widely distributed in
the genome. CNV detection opens a new avenue for exploring genes associated with …