Advances and applications of occupancy models

LL Bailey, DI MacKenzie… - Methods in Ecology and …, 2014 - Wiley Online Library
The past decade has seen an explosion in the development and application of models
aimed at estimating species occurrence and occupancy dynamics while accounting for …

[HTML][HTML] History, applications, methodological issues and perspectives for the use environmental DNA (eDNA) in marine and freshwater environments

EE Díaz-Ferguson, GR Moyer - Revista de biologia tropical, 2014 - scielo.sa.cr
Genetic material (short DNA fragments) left behind by species in nonliving components of
the environment (eg soil, sediment, or water) is defined as environmental DNA (eDNA). This …

Site occupancy models in the analysis of environmental DNA presence/absence surveys: a case study of an emerging amphibian pathogen

BR Schmidt, M Kéry, S Ursenbacher… - Methods in Ecology …, 2013 - Wiley Online Library
The use of environmental DNA (eDNA) to detect species in aquatic environments such as
ponds and streams is a powerful new technique with many benefits. However, species …

Statistical approaches to account for false‐positive errors in environmental DNA samples

JJ Lahoz‐Monfort, G Guillera‐Arroita… - Molecular Ecology …, 2016 - Wiley Online Library
Environmental DNA (eDNA) sampling is prone to both false‐positive and false‐negative
errors. We review statistical methods to account for such errors in the analysis of eDNA data …

Dealing with false‐positive and false‐negative errors about species occurrence at multiple levels

G Guillera‐Arroita, JJ Lahoz‐Monfort… - Methods in Ecology …, 2017 - Wiley Online Library
Accurate knowledge of species occurrence is fundamental to a wide variety of ecological,
evolutionary and conservation applications. Assessing the presence or absence of species …

Quantifying variable importance in a multimodel inference framework

X Giam, JD Olden - Methods in Ecology and Evolution, 2016 - Wiley Online Library
The sum of Akaike weights (SW) is often used to quantify relative variable importance (RVI)
within the information‐theoretic (IT) multimodel inference framework. A recent study …

Disease and climate effects on individuals drive post‐reintroduction population dynamics of an endangered amphibian

MB Joseph, RA Knapp - Ecosphere, 2018 - Wiley Online Library
The emergence of novel pathogens often has dramatic negative effects on previously
unexposed host populations. Subsequent disease can drive populations and even species …

Imperfect pathogen detection from non‐invasive skin swabs biases disease inference

GV DiRenzo, EH Campbell Grant… - Methods in Ecology …, 2018 - Wiley Online Library
Conservation managers rely on accurate estimates of disease parameters, such as
pathogen prevalence and infection intensity, to assess disease status of a host population …

Eco‐evolutionary rescue promotes host–pathogen coexistence

GV DiRenzo, EF Zipkin, EHC Grant… - Ecological …, 2018 - Wiley Online Library
Emerging infectious pathogens are responsible for some of the most severe host mass
mortality events in wild populations. Yet, effective pathogen control strategies are notoriously …

Unexpected Rarity of the Pathogen Batrachochytrium dendrobatidis in Appalachian Plethodon Salamanders: 1957–2011

C Muletz, NM Caruso, RC Fleischer, RW McDiarmid… - PLoS …, 2014 - journals.plos.org
Widespread population declines in terrestrial Plethodon salamanders occurred by the 1980s
throughout the Appalachian Mountains, the center of global salamander diversity, with no …