Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Populus has become an important model plant system. However, utilization of the
increasingly extensive collection of genetics and genomics data created by the community is …

Background There has been a surge in studies linking genome structure and gene
expression, with special focus on duplicated genes. Although initially duplicated from the …

PAX2GRAPHML is an open-source Python library that allows to easily manipulate BioPAX
source files as regulated reaction graphs described in. graphml format. The concept of …

Galaxy is a popular framework for execution of complex analytical pipelines typically for
large data sets, and is a commonly used for (but not limited to) genomic, genetic and related …

AnnotQTL is a web tool designed to aggregate functional annotations from different
prominent web sites by minimizing the redundancy of information. Although thousands of …

Information about proteins and their relationships to each other are a common source of
input for many areas of Systems Biology, such as protein function prediction, relevance …

Motivation: There are various reasons for rerunning bioinformatics tools and pipelines on
sequencing data, including reproducing a past result, validation of a new tool or workflow …

With the rise of Data as a Service, companies understood that whoever controls the data has
the power. The past few years have exposed some of the weakenesses of traditional data …

Résumé Biological systems involve a large number of different entities, each functionning in
a coordinated manner with the others. Their understanding is crucial and can be …