Phylogenomics and the rise of the angiosperms
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …
robust understanding of angiosperm evolution is required to explain their rise to ecological …
Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling
Mountains are among the most biodiverse places on Earth, and plant lineages that inhabit
them have some of the highest speciation rates ever recorded. Plant diversity within the …
them have some of the highest speciation rates ever recorded. Plant diversity within the …
The meaning and measure of concordance factors in phylogenomics
As phylogenomic datasets have grown in size, researchers have developed new ways to
measure biological variation and to assess statistical support for specific branches. Larger …
measure biological variation and to assess statistical support for specific branches. Larger …
A nuclear phylogenomic tree of grasses (Poaceae) recovers current classification despite gene tree incongruence
Grass Phylogeny Working Group III, W Arthan… - New …, 2025 - Wiley Online Library
Summary Grasses (Poaceae) comprise c. 11 800 species and are central to human
livelihoods and terrestrial ecosystems. Knowing their relationships and evolutionary history …
livelihoods and terrestrial ecosystems. Knowing their relationships and evolutionary history …
Robustness of divergence time estimation despite gene tree estimation error: a case study of fireflies (Coleoptera: Lampyridae)
Genomic data have become ubiquitous in phylogenomic studies, including divergence time
estimation, but provide new challenges. These challenges include, among others, biological …
estimation, but provide new challenges. These challenges include, among others, biological …
A Phylogenomic Backbone for Acoelomorpha Inferred From Transcriptomic Data
S Abalde, U Jondelius - Systematic Biology, 2024 - academic.oup.com
Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many
structures typical of other bilaterians. Xenacoelomorphs—which include three main groups …
structures typical of other bilaterians. Xenacoelomorphs—which include three main groups …
Estimation of divergence time and comparative plastid genomics of Orchis species (Orchidaceae)
Low-coverage sequencing in plants allows whole plastomes to be obtained that can be
used to investigate phylogenetic relationships among groups. The genus Orchis (c. 20 …
used to investigate phylogenetic relationships among groups. The genus Orchis (c. 20 …
Genome-wide identification, evolutionary and mutational analysis of the buffalo sox gene family
Simple Summary The Sox gene family is a set of specific transcriptional factor (TF) proteins,
with a very similar sequence compared to the sex-determining region Y (SRY), related high …
with a very similar sequence compared to the sex-determining region Y (SRY), related high …
Chronospaces: An R package for the statistical exploration of divergence times promotes the assessment of methodological sensitivity
N Mongiardino Koch… - Methods in Ecology and …, 2024 - Wiley Online Library
Much of our understanding of the history of life hinges upon time calibration, the process of
assigning absolute times to cladogenetic events. Bayesian approaches to time‐scaling …
assigning absolute times to cladogenetic events. Bayesian approaches to time‐scaling …
Explaining extreme differences in species richness among co-occurring palm clades in Madagascar
WL Eiserhardt, LESF Hansen… - … Journal of the …, 2024 - academic.oup.com
Imbalance in species richness among related clades is a pervasive, yet incompletely
understood feature of biodiversity. Comparison of species-poor and species-rich clades that …
understood feature of biodiversity. Comparison of species-poor and species-rich clades that …