Structure-and mechanism-guided design of single fluorescent protein-based biosensors

Y Nasu, Y Shen, L Kramer, RE Campbell - Nature chemical biology, 2021 - nature.com
Intensiometric genetically encoded biosensors, based on allosteric modulation of the
fluorescence of a single fluorescent protein, are powerful tools for enabling imaging of …

High-throughput screening technology in industrial biotechnology

W Zeng, L Guo, S Xu, J Chen, J Zhou - Trends in biotechnology, 2020 - cell.com
Based on the development of automatic devices and rapid assay methods, various high-
throughput screening (HTS) strategies have been established for improving the performance …

A high-throughput multiparameter screen for accelerated development and optimization of soluble genetically encoded fluorescent biosensors

D Koveal, PC Rosen, DJ Meyer… - Nature …, 2022 - nature.com
Genetically encoded fluorescent biosensors are powerful tools used to track chemical
processes in intact biological systems. However, the development and optimization of …

Fundamental design principles for transcription-factor-based metabolite biosensors

AA Mannan, D Liu, F Zhang, DA Oyarzún - ACS synthetic biology, 2017 - ACS Publications
Metabolite biosensors are central to current efforts toward precision engineering of
metabolism. Although most research has focused on building new biosensors, their …

Transcription factor-based biosensors: a molecular-guided approach for natural product engineering

MM Mitchler, JM Garcia, NE Montero… - Current opinion in …, 2021 - Elsevier
Natural products and their derivatives offer a rich source of chemical and biological diversity;
however, traditional engineering of their biosynthetic pathways to improve yields and access …

Development of epistatic YES and AND protein logic gates and their assembly into signalling cascades

Z Guo, O Smutok, CE Ayva, P Walden, J Parker… - Nature …, 2023 - nature.com
The construction and assembly of artificial allosteric protein switches into information and
energy processing networks connected to both biological and non-biological systems is a …

Circularly permuted fluorescent protein-based indicators: history, principles, and classification

AI Kostyuk, AD Demidovich, DA Kotova… - International journal of …, 2019 - mdpi.com
Genetically encoded biosensors based on fluorescent proteins (FPs) are a reliable tool for
studying the various biological processes in living systems. The circular permutation of …

Next-generation genetically encoded fluorescent biosensors illuminate cell signaling and metabolism

MS Frei, S Mehta, J Zhang - Annual Review of Biophysics, 2024 - annualreviews.org
Genetically encoded fluorescent biosensors have revolutionized the study of cell signaling
and metabolism, as they allow for live-cell measurements with high spatiotemporal …

Repurposing conformational changes in ANL superfamily enzymes to rapidly generate biosensors for organic and amino acids

J Wang, N Xue, W Pan, R Tu, S Li, Y Zhang… - Nature …, 2023 - nature.com
Biosensors are powerful tools for detecting, real-time imaging, and quantifying molecules,
but rapidly constructing diverse genetically encoded biosensors remains challenging. Here …

Structures of the CRISPR genome integration complex

AV Wright, JJ Liu, GJ Knott, KW Doxzen, E Nogales… - Science, 2017 - science.org
CRISPR-Cas systems depend on the Cas1-Cas2 integrase to capture and integrate short
foreign DNA fragments into the CRISPR locus, enabling adaptation to new viruses. We …