[HTML][HTML] TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations

SG Balasubramani, GP Chen, S Coriani… - The Journal of …, 2020 - pubs.aip.org
TURBOMOLE is a collaborative, multi-national software development project aiming to
provide highly efficient and stable computational tools for quantum chemical simulations of …

CHARMM: the biomolecular simulation program

BR Brooks, CL Brooks III… - Journal of …, 2009 - Wiley Online Library
Abstract CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and
widely used molecular simulation program. It has been developed over the last three …

Martini 3: a general purpose force field for coarse-grained molecular dynamics

PCT Souza, R Alessandri, J Barnoud, S Thallmair… - Nature …, 2021 - nature.com
The coarse-grained Martini force field is widely used in biomolecular simulations. Here we
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …

Mechanisms of antigen escape from BCMA-or GPRC5D-targeted immunotherapies in multiple myeloma

H Lee, S Ahn, R Maity, N Leblay, B Ziccheddu… - Nature medicine, 2023 - nature.com
B cell maturation antigen (BCMA) target loss is considered to be a rare event that mediates
multiple myeloma (MM) resistance to anti-BCMA chimeric antigen receptor T cell (CAR T) or …

[HTML][HTML] GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith… - SoftwareX, 2015 - Elsevier
GROMACS is one of the most widely used open-source and free software codes in
chemistry, used primarily for dynamical simulations of biomolecules. It provides a rich set of …

A monofluoride ether-based electrolyte solution for fast-charging and low-temperature non-aqueous lithium metal batteries

G Zhang, J Chang, L Wang, J Li, C Wang… - Nature …, 2023 - nature.com
The electrochemical stability window of the electrolyte solution limits the energy content of
non-aqueous lithium metal batteries. In particular, although electrolytes comprising …

Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis

VE Kagan, G Mao, F Qu, JPF Angeli, S Doll… - Nature chemical …, 2017 - nature.com
Enigmatic lipid peroxidation products have been claimed as the proximate executioners of
ferroptosis—a specialized death program triggered by insufficiency of glutathione …

Ultrathin, flexible, solid polymer composite electrolyte enabled with aligned nanoporous host for lithium batteries

J Wan, J **e, X Kong, Z Liu, K Liu, F Shi, A Pei… - Nature …, 2019 - nature.com
The urgent need for safer batteries is leading research to all-solid-state lithium-based cells.
To achieve energy density comparable to liquid electrolyte-based cells, ultrathin and …

Routine microsecond molecular dynamics simulations with AMBER on GPUs. 2. Explicit solvent particle mesh Ewald

R Salomon-Ferrer, AW Gotz, D Poole… - Journal of chemical …, 2013 - ACS Publications
We present an implementation of explicit solvent all atom classical molecular dynamics (MD)
within the AMBER program package that runs entirely on CUDA-enabled GPUs. First …

Nirmatrelvir-resistant SARS-CoV-2 variants with high fitness in an infectious cell culture system

Y Zhou, KA Gammeltoft, LA Ryberg, LV Pham… - Science …, 2022 - science.org
The oral protease inhibitor nirmatrelvir is of key importance for prevention of severe
coronavirus disease 2019 (COVID-19). To facilitate resistance monitoring, we studied …