A review of single-cell rna-seq annotation, integration, and cell–cell communication

C Cheng, W Chen, H **, X Chen - Cells, 2023 - mdpi.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful tool for investigating
cellular biology at an unprecedented resolution, enabling the characterization of cellular …

T cell subsets and functions in atherosclerosis

R Saigusa, H Winkels, K Ley - Nature Reviews Cardiology, 2020 - nature.com
Atherosclerosis is a chronic inflammatory disease of the arterial wall and the primary
underlying cause of cardiovascular disease. Data from in vivo imaging, cell-lineage tracing …

Liver tumour immune microenvironment subtypes and neutrophil heterogeneity

R Xue, Q Zhang, Q Cao, R Kong, X **ang, H Liu… - Nature, 2022 - nature.com
The heterogeneity of the tumour immune microenvironment (TIME), organized by various
immune and stromal cells, is a major contributing factor of tumour metastasis, relapse and …

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data

C Hu, T Li, Y Xu, X Zhang, F Li, J Bai… - Nucleic acids …, 2023 - academic.oup.com
Abstract CellMarker 2.0 (http://bio-bigdata. hrbmu. edu. cn/CellMarker or http://117.50.
127.228/CellMarker/) is an updated database that provides a manually curated collection of …

Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration

X Wei, S Fu, H Li, Y Liu, S Wang, W Feng, Y Yang… - Science, 2022 - science.org
The molecular mechanism underlying brain regeneration in vertebrates remains elusive. We
performed spatial enhanced resolution omics sequencing (Stereo-seq) to capture spatially …

Time-resolved single-cell transcriptomics defines immune trajectories in glioblastoma

D Kirschenbaum, K **e, F Ingelfinger… - Cell, 2024 - cell.com
Deciphering the cell-state transitions underlying immune adaptation across time is
fundamental for advancing biology. Empirical in vivo genomic technologies that capture …

Siglec-9 acts as an immune-checkpoint molecule on macrophages in glioblastoma, restricting T-cell priming and immunotherapy response

Y Mei, X Wang, J Zhang, D Liu, J He, C Huang, J Liao… - Nature cancer, 2023 - nature.com
Neoadjuvant immune-checkpoint blockade therapy only benefits a limited fraction of patients
with glioblastoma multiforme (GBM). Thus, targeting other immunomodulators on myeloid …

Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing

J Hu, L Zhang, H **a, Y Yan, X Zhu, F Sun, L Sun, S Li… - Genome medicine, 2023 - Springer
Background Immunotherapy has revolutionized cancer treatment, but most patients are
refractory to immunotherapy or acquire resistance, with the underlying mechanisms …

Age-specific nasal epithelial responses to SARS-CoV-2 infection

MNJ Woodall, AM Cujba, KB Worlock, KM Case… - Nature …, 2024 - nature.com
Children infected with SARS-CoV-2 rarely progress to respiratory failure. However, the risk
of mortality in infected people over 85 years of age remains high. Here we investigate …

[HTML][HTML] An NK-like CAR T cell transition in CAR T cell dysfunction

CR Good, MA Aznar, S Kuramitsu, P Samareh… - Cell, 2021 - cell.com
Chimeric antigen receptor (CAR) T cell therapy has achieved remarkable success in
hematological malignancies but remains ineffective in solid tumors, due in part to CAR T cell …