Evolution and function of chromatin domains across the tree of life

MF Szalay, B Majchrzycka, I Jerković… - Nature Structural & …, 2024 - nature.com
The genome of all organisms is spatially organized to function efficiently. The advent of
genome-wide chromatin conformation capture (Hi-C) methods has revolutionized our ability …

Genetic and genomic resources for Rubus breeding: a roadmap for the future

TM Foster, NV Bassil, M Dossett… - Horticulture …, 2019 - academic.oup.com
Rubus fruits are high-value crops that are sought after by consumers for their flavor, visual
appeal, and health benefits. To meet this demand, production of red and black raspberries …

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

S Jung, T Lee, CH Cheng, K Buble… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Genome Database for Rosaceae (GDR, https://www. rosaceae. org) is an
integrated web-based community database resource providing access to publicly available …

Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis

A Rai, H Hirakawa, R Nakabayashi, S Kikuchi… - Nature …, 2021 - nature.com
Plant genomes remain highly fragmented and are often characterized by hundreds to
thousands of assembly gaps. Here, we report chromosome-level reference and phased …

The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant

JD Chen, C Zheng, JQ Ma, CK Jiang… - Horticulture …, 2020 - academic.oup.com
Tea is one of the most popular nonalcoholic beverages due to its characteristic secondary
metabolites with numerous health benefits. Although two draft genomes of tea plant …

The chromosome-level quality genome provides insights into the evolution of the biosynthesis genes for aroma compounds of Osmanthus fragrans

X Yang, Y Yue, H Li, W Ding, G Chen, T Shi… - Horticulture …, 2018 - academic.oup.com
Sweet osmanthus (Osmanthus fragrans) is a very popular ornamental tree species
throughout Southeast Asia and USA particularly for its extremely fragrant aroma. We …

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

R VanBuren, CM Wai, M Colle, J Wang, S Sullivan… - …, 2018 - academic.oup.com
Background The fragmented nature of most draft plant genomes has hindered downstream
gene discovery, trait map** for breeding, and other functional genomics applications …

A chromosome-scale assembly of the quinoa genome provides insights into the structure and dynamics of its subgenomes

E Rey, PJ Maughan, F Maumus, D Lewis… - Communications …, 2023 - nature.com
Abstract Quinoa (Chenopodium quinoa Willd.) is an allotetraploid seed crop with the
potential to help address global food security concerns. Genomes have been assembled for …

The chromosome‐scale reference genome of Rubus chingii Hu provides insight into the biosynthetic pathway of hydrolyzable tannins

L Wang, T Lei, G Han, J Yue, X Zhang, Q Yang… - The plant …, 2021 - Wiley Online Library
SUMMARY Rubus chingii Hu (Fu‐Pen‐Zi), a perennial woody plant in the Rosaceae family,
is a characteristic traditional Chinese medicinal plant because of its unique pharmacological …

Towards smart and sustainable development of modern berry cultivars in Europe

E Senger, S Osorio, K Olbricht, P Shaw… - The plant …, 2022 - Wiley Online Library
Fresh berries are a popular and important component of the human diet. The demand for
high‐quality berries and sustainable production methods is increasing globally, challenging …