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Polypharmacology: drug discovery for the future
AS Reddy, S Zhang - Expert review of clinical pharmacology, 2013 - Taylor & Francis
In recent years, even with remarkable scientific advancements and a significant increase of
global research and development spending, drugs are frequently withdrawn from markets …
global research and development spending, drugs are frequently withdrawn from markets …
Efficient exploration of chemical space with docking and deep learning
With the advent of make-on-demand commercial libraries, the number of purchasable
compounds available for virtual screening and assay has grown explosively in recent years …
compounds available for virtual screening and assay has grown explosively in recent years …
ZINC 15–ligand discovery for everyone
Many questions about the biological activity and availability of small molecules remain
inaccessible to investigators who could most benefit from their answers. To narrow the gap …
inaccessible to investigators who could most benefit from their answers. To narrow the gap …
BindingDB: a web-accessible database of experimentally determined protein–ligand binding affinities
BindingDB () is a publicly accessible database currently containing∼ 20 000 experimentally
determined binding affinities of protein–ligand complexes, for 110 protein targets including …
determined binding affinities of protein–ligand complexes, for 110 protein targets including …
Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
Background Structure elucidation of unknown small molecules by mass spectrometry is a
challenge despite advances in instrumentation. The first crucial step is to obtain correct …
challenge despite advances in instrumentation. The first crucial step is to obtain correct …
The Chemistry Development Kit (CDK): An open-source Java library for chemo-and bioinformatics
The Chemistry Development Kit (CDK) is a freely available open-source Java library for
Structural Chemo-and Bioinformatics. Its architecture and capabilities as well as the …
Structural Chemo-and Bioinformatics. Its architecture and capabilities as well as the …
The PDBbind database: methodologies and updates
R Wang, X Fang, Y Lu, CY Yang… - Journal of medicinal …, 2005 - ACS Publications
We have developed the PDBbind database to provide a comprehensive collection of
binding affinities for the protein− ligand complexes in the Protein Data Bank (PDB). This …
binding affinities for the protein− ligand complexes in the Protein Data Bank (PDB). This …
VEGA–an open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming
In this paper we present the expandability and flexibility features of the VEGA program
(downloadable free of charge at http://www. ddl. unimi. it), for the development of custom …
(downloadable free of charge at http://www. ddl. unimi. it), for the development of custom …
NPACT: naturally occurring plant-based anti-cancer compound-activity-target database
Plant-derived molecules have been highly valued by biomedical researchers and
pharmaceutical companies for develo** drugs, as they are thought to be optimized during …
pharmaceutical companies for develo** drugs, as they are thought to be optimized during …
The University of Minnesota biocatalysis/biodegradation database: improving public access
J Gao, LBM Ellis, LP Wackett - Nucleic acids research, 2010 - academic.oup.com
ABSTRACT The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD,
http://umbbd. msi. umn. edu/) began in 1995 and now contains information on almost 1200 …
http://umbbd. msi. umn. edu/) began in 1995 and now contains information on almost 1200 …