A review of super-resolution single-molecule localization microscopy cluster analysis and quantification methods

IM Khater, IR Nabi, G Hamarneh - Patterns, 2020 - cell.com
Single-molecule localization microscopy (SMLM) is a relatively new imaging modality,
winning the 2014 Nobel Prize in Chemistry, and considered as one of the key super …

Super-resolution microscopy: from single molecules to supramolecular assemblies

AM Sydor, KJ Czymmek, EM Puchner, V Mennella - Trends in cell biology, 2015 - cell.com
Super-resolution microscopy (SRM) methods have allowed scientists to exceed the
diffraction limit of light, enabling the discovery and investigation of cellular structures at the …

Democratising deep learning for microscopy with ZeroCostDL4Mic

L von Chamier, RF Laine, J Jukkala, C Spahn… - Nature …, 2021 - nature.com
Deep Learning (DL) methods are powerful analytical tools for microscopy and can
outperform conventional image processing pipelines. Despite the enthusiasm and …

C-terminal calcium binding of α-synuclein modulates synaptic vesicle interaction

J Lautenschläger, AD Stephens, G Fusco… - Nature …, 2018 - nature.com
Alpha-synuclein is known to bind to small unilamellar vesicles (SUVs) via its N terminus,
which forms an amphipathic alpha-helix upon membrane interaction. Here we show that …

Direct stochastic optical reconstruction microscopy with standard fluorescent probes

S Van de Linde, A Löschberger, T Klein… - Nature protocols, 2011 - nature.com
Direct stochastic optical reconstruction microscopy (d STORM) uses conventional
fluorescent probes such as labeled antibodies or chemical tags for subdiffraction resolution …

Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis

P Sengupta, T Jovanovic-Talisman, D Skoko, M Renz… - Nature …, 2011 - nature.com
Photoactivated localization microscopy (PALM) is a powerful approach for investigating
protein organization, yet tools for quantitative, spatial analysis of PALM datasets are largely …

Functional role of T-cell receptor nanoclusters in signal initiation and antigen discrimination

SV Pageon, T Tabarin, Y Yamamoto, Y Ma… - Proceedings of the …, 2016 - pnas.org
Antigen recognition by the T-cell receptor (TCR) is a hallmark of the adaptive immune
system. When the TCR engages a peptide bound to the restricting major histocompatibility …

TIGIT can inhibit T cell activation via ligation-induced nanoclusters, independent of CD226 co-stimulation

JD Worboys, KN Vowell, RK Hare, AR Ambrose… - Nature …, 2023 - nature.com
TIGIT is an inhibitory receptor expressed on lymphocytes and can inhibit T cells by
preventing CD226 co-stimulation through interactions in cis or through competition of shared …

Exploring the existence of lipid rafts in bacteria

M Bramkamp, D Lopez - Microbiology and Molecular Biology …, 2015 - journals.asm.org
An interesting concept in the organization of cellular membranes is the proposed existence
of lipid rafts. Membranes of eukaryotic cells organize signal transduction proteins into …

Shelterin protects chromosome ends by compacting telomeric chromatin

JN Bandaria, P Qin, V Berk, S Chu, A Yildiz - Cell, 2016 - cell.com
Telomeres, repetitive DNA sequences at chromosome ends, are shielded against the DNA
damage response (DDR) by the shelterin complex. To understand how shelterin protects …