The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

P Lamesch, TZ Berardini, D Li, D Swarbreck… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Arabidopsis Information Resource (TAIR, http://arabidopsis. org) is a genome
database for Arabidopsis thaliana, an important reference organism for many fundamental …

Making proteomics data accessible and reusable: current state of proteomics databases and repositories

Y Perez‐Riverol, E Alpi, R Wang, H Hermjakob… - …, 2015 - Wiley Online Library
Compared to other data‐intensive disciplines such as genomics, public deposition and
storage of MS‐based proteomics, data are still less developed due to, among other reasons …

Recent advances and challenges in plant phosphoproteomics

C Silva‐Sanchez, H Li, S Chen - Proteomics, 2015 - Wiley Online Library
Plants are sessile organisms that need to respond to environmental changes quickly and
efficiently. They can accomplish this by triggering specialized signaling pathways often …

Regulation of leaf starch degradation by abscisic acid is important for osmotic stress tolerance in plants

M Thalmann, D Pazmino, D Seung, D Horrer… - The Plant …, 2016 - academic.oup.com
Starch serves functions that range over a timescale of minutes to years, according to the cell
type from which it is derived. In guard cells, starch is rapidly mobilized by the synergistic …

Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation

J Bazin, K Baerenfaller, SJ Gosai… - Proceedings of the …, 2017 - National Acad Sciences
Eukaryotic transcriptomes contain a major non–protein-coding component that includes
precursors of small RNAs as well as long noncoding RNA (lncRNAs). Here, we utilized the …

The Ubiquitous Distribution of Late Embryogenesis Abundant Proteins across Cell Compartments in Arabidopsis Offers Tailored Protection against Abiotic Stress

A Candat, G Paszkiewicz, M Neveu, R Gautier… - The Plant …, 2014 - academic.oup.com
Late embryogenesis abundant (LEA) proteins are hydrophilic, mostly intrinsically disordered
proteins, which play major roles in desiccation tolerance. In Arabidopsis thaliana, 51 genes …

Arabidopsis MSI1 connects LHP1 to PRC2 complexes

M Derkacheva, Y Steinbach, T Wildhaber… - The EMBO …, 2013 - embopress.org
Polycomb group (PcG) proteins form essential epigenetic memory systems for controlling
gene expression during development in plants and animals. However, the mechanism of …

Systems‐based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

K Baerenfaller, C Massonnet, S Walsh… - Molecular systems …, 2012 - embopress.org
Leaves have a central role in plant energy capture and carbon conversion and therefore
must continuously adapt their development to prevailing environmental conditions. To reveal …

STARCH SYNTHASE5, a noncanonical starch synthase-like protein, promotes starch granule initiation in Arabidopsis

MR Abt, B Pfister, M Sharma, S Eicke, L Bürgy… - Plant Cell, 2020 - academic.oup.com
What determines the number of starch granules in plastids is an enigmatic aspect of starch
metabolism. Several structurally and functionally diverse proteins have been implicated in …

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

S Reiland, G Finazzi, A Endler… - Proceedings of the …, 2011 - National Acad Sciences
Important aspects of photosynthetic electron transport efficiency in chloroplasts are
controlled by protein phosphorylation. Two thylakoid-associated kinases, STN7 and STN8 …