How to track and assess genoty** errors in population genetics studies

A Bonin, E Bellemain, P Bronken Eidesen… - Molecular …, 2004 - Wiley Online Library
Genoty** errors occur when the genotype determined after molecular analysis does not
correspond to the real genotype of the individual under consideration. Virtually every genetic …

Understanding the relationship between the inbreeding coefficient and multilocus heterozygosity: theoretical expectations and empirical data

J Slate, P David, KG Dodds, BA Veenvliet, BC Glass… - Heredity, 2004 - nature.com
Geneticists have been interested in inbreeding and inbreeding depression since the time of
Darwin. Two alternative approaches that can be used to measure how inbred an individual …

Quantifying genoty** errors in noninvasive population genetics

T Broquet, E Petit - Molecular Ecology, 2004 - Wiley Online Library
The use of noninvasively collected samples greatly expands the range of ecological issues
that may be investigated through population genetics. Furthermore, the difficulty of obtaining …

Immigration and the ephemerality of a natural population bottleneck: evidence from molecular markers

LF Keller, KJ Jeffery, P Arcese… - … of the Royal …, 2001 - royalsocietypublishing.org
Population bottlenecks are often invoked to explain low levels of genetic variation in natural
populations, yet few studies have documented the direct genetic consequences of known …

Cultural and genetic evolution in mountain white‐crowned sparrows: song dialects are associated with population structure

EA MacDougall‐Shackleton… - …, 2001 - Wiley Online Library
Bird song often varies geographically within a species; when this geographic variation has
distinct boundaries, the shared song types are referred to as song dialects. How dialects are …

Migration-selection balance and local adaptation of mitochondrial haplotypes in rufous-collared sparrows (Zonotrichia capensis) along an elevational gradient

ZA Cheviron, RT Brumfield - Evolution, 2009 - academic.oup.com
Variable selection pressures across heterogeneous landscapes can lead to local adaptation
of populations. The extent of local adaptation depends on the interplay between natural …

Habitat selection, acoustic adaptation, and the evolution of reproductive isolation

MA Patten, JT Rotenberry, M Zuk - Evolution, 2004 - academic.oup.com
We examined barriers to gene flow in a hybrid zone of two subspecies of the song sparrow
(Melospiza melodia). We focused on how mating signals and mate choice changed along …

Sex-specific consequences of life in the city

F Bonier, PR Martin, KS Sheldon, JP Jensen… - Behavioral …, 2007 - academic.oup.com
The vast majority of species are excluded from human-dominated landscapes, but some
species persist and appear to thrive, despite facing challenges they would not encounter in …

Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data

PCD Johnson, DT Haydon - Genetics, 2007 - academic.oup.com
The importance of quantifying and accounting for stochastic genoty** errors when
analyzing microsatellite data is increasingly being recognized. This awareness is motivating …

The effects of sample size on population genetic diversity estimates in song sparrows Melospiza melodia

C L. Pruett, K Winker - Journal of Avian Biology, 2008 - Wiley Online Library
To empirically determine the effects of sample size on commonly used measures of average
genetic diversity, we genotyped 200 song sparrows Melospiza melodia from two …