Functional Annotation of Animal Genomes (FAANG): current achievements and roadmap
Functional annotation of genomes is a prerequisite for contemporary basic and applied
genomic research, yet farmed animal genomics is deficient in such annotation. To address …
genomic research, yet farmed animal genomics is deficient in such annotation. To address …
Regulation of human MAPT gene expression
ML Caillet-Boudin, L Buée, N Sergeant… - Molecular …, 2015 - Springer
The number of known pathologies involving deregulated Tau expression/metabolism is
increasing. Indeed, in addition to tauopathies, which comprise approximately 30 diseases …
increasing. Indeed, in addition to tauopathies, which comprise approximately 30 diseases …
Single-cell RNAseq for the study of isoforms—how is that possible?
Single-cell RNAseq and alternative splicing studies have recently become two of the most
prominent applications of RNAseq. However, the combination of both is still challenging …
prominent applications of RNAseq. However, the combination of both is still challenging …
Comprehensive comparative analysis of 5′-end RNA-sequencing methods
Specialized RNA-seq methods are required to identify the 5′ ends of transcripts, which are
critical for studies of gene regulation, but these methods have not been systematically …
critical for studies of gene regulation, but these methods have not been systematically …
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species
Background Numerous long non-coding RNAs (lncRNAs) have been identified and their
roles in gene regulation in humans, mice, and other model organisms studied; however, far …
roles in gene regulation in humans, mice, and other model organisms studied; however, far …
GENCODE 2025: reference gene annotation for human and mouse
GENCODE produces comprehensive reference gene annotation for human and mouse.
Entering its twentieth year, the project remains highly active as new technologies and …
Entering its twentieth year, the project remains highly active as new technologies and …
Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function
Alu elements are one of the most successful families of transposons in the human genome.
A portion of Alu elements is transcribed by RNA Pol III, whereas the remaining ones are part …
A portion of Alu elements is transcribed by RNA Pol III, whereas the remaining ones are part …
The Xa7 resistance gene guards the rice susceptibility gene SWEET14 against exploitation by the bacterial blight pathogen
Many plant disease resistance (R) genes function specifically in reaction to the presence of
cognate effectors from a pathogen. Xanthomonas oryzae pathovar oryzae (Xoo) uses …
cognate effectors from a pathogen. Xanthomonas oryzae pathovar oryzae (Xoo) uses …
Plasticity and heterogeneity of thermogenic adipose tissue
The perception of adipose tissue, both in the scientific community and in the general
population, has changed dramatically in the past 20 years. While adipose tissue was …
population, has changed dramatically in the past 20 years. While adipose tissue was …
Global 5′-UTR RNA structure regulates translation of a SERPINA1 mRNA
PJ Grayeski, CA Weidmann, J Kumar… - Nucleic Acids …, 2022 - academic.oup.com
SERPINA1 mRNAs encode the protease inhibitor α-1-antitrypsin and are regulated through
post-transcriptional mechanisms. α-1-antitrypsin deficiency leads to chronic obstructive …
post-transcriptional mechanisms. α-1-antitrypsin deficiency leads to chronic obstructive …