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Mammal madness: is the mammal tree of life not yet resolved?
Most molecular phylogenetic studies place all placental mammals into four superordinal
groups, Laurasiatheria (eg dogs, bats, whales), Euarchontoglires (eg humans, rodents …
groups, Laurasiatheria (eg dogs, bats, whales), Euarchontoglires (eg humans, rodents …
Causes, consequences and solutions of phylogenetic incongruence
A Som - Briefings in Bioinformatics, 2015 - academic.oup.com
Phylogenetic analysis is used to recover the evolutionary history of species, genes or
proteins. Understanding phylogenetic relationships between organisms is a prerequisite of …
proteins. Understanding phylogenetic relationships between organisms is a prerequisite of …
Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
A genomic timescale for placental mammal evolution
The precise pattern and timing of speciation events that gave rise to all living placental
mammals remain controversial. We provide a comprehensive phylogenetic analysis of …
mammals remain controversial. We provide a comprehensive phylogenetic analysis of …
[HTML][HTML] A comprehensive and dated phylogenomic analysis of butterflies
Summary Butterflies (Papilionoidea), with over 18,000 described species [1], have
captivated naturalists and scientists for centuries. They play a central role in the study of …
captivated naturalists and scientists for centuries. They play a central role in the study of …
Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling
Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been
viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life …
viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life …
Phylotranscriptomic consolidation of the jawed vertebrate timetree
Phylogenomics is extremely powerful but introduces new challenges as no agreement exists
on 'standards' for data selection, curation and tree inference. We use jawed vertebrates …
on 'standards' for data selection, curation and tree inference. We use jawed vertebrates …
Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six …
Phylogenomics is increasingly used to infer deep‐branching relationships while revealing
the complexity of evolutionary processes such as incomplete lineage sorting, hybridization …
the complexity of evolutionary processes such as incomplete lineage sorting, hybridization …
Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
Much progress has been achieved in disentangling evolutionary relationships among
species in the tree of life, but some taxonomic groups remain difficult to resolve despite …
species in the tree of life, but some taxonomic groups remain difficult to resolve despite …
The gene tree delusion
Higher-level relationships among placental mammals are mostly resolved, but several
polytomies remain contentious. Song et al.(2012) claimed to have resolved three of these …
polytomies remain contentious. Song et al.(2012) claimed to have resolved three of these …