Chloroplast gene expression: Recent advances and perspectives

Y Zhang, L Tian, C Lu - Plant Communications, 2023‏ - cell.com
Chloroplasts evolved from an ancient cyanobacterial endosymbiont more than 1.5 billion
years ago. During subsequent coevolution with the nuclear genome, the chloroplast …

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

J Georg, WR Hess - Microbiology and Molecular Biology Reviews, 2011‏ - journals.asm.org
SUMMARY A substantial amount of antisense transcription is a hallmark of gene expression
in eukaryotes. However, antisense transcription was first demonstrated in bacteria almost 50 …

[HTML][HTML] Chloroplast RNA polymerases: role in chloroplast biogenesis

T Börner, AY Aleynikova, YO Zubo… - Biochimica et Biophysica …, 2015‏ - Elsevier
Plastid genes are transcribed by two types of RNA polymerase in angiosperms: the bacterial
type plastid-encoded RNA polymerase (PEP) and one (RPOTp in monocots) or two (RPOTp …

An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803

J Mitschke, J Georg, I Scholz, CM Sharma… - Proceedings of the …, 2011‏ - pnas.org
There has been an increasing interest in cyanobacteria because these photosynthetic
organisms convert solar energy into biomass and because of their potential for the …

The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase

P Zhelyazkova, CM Sharma, KU Förstner, K Liere… - The Plant …, 2012‏ - academic.oup.com
Gene expression in plastids of higher plants is dependent on two different transcription
machineries, a plastid-encoded bacterial-type RNA polymerase (PEP) and a nuclear …

Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome

S Mungpakdee, C Shinzato, T Takeuchi… - Genome biology and …, 2014‏ - academic.oup.com
Genome sequencing of Symbiodinium minutum revealed that 95 of 109 plastid-associated
genes have been transferred to the nuclear genome and subsequently expanded by gene …

HIV-1-encoded antisense RNA suppresses viral replication for a prolonged period

M Kobayashi-Ishihara, M Yamagishi, T Hara… - Retrovirology, 2012‏ - Springer
Background Recent evidence proposes a novel concept that mammalian natural antisense
RNAs play important roles in cellular homeostasis by regulating the expression of several …

Full transcription of the chloroplast genome in photosynthetic eukaryotes

C Shi, S Wang, EH **a, JJ Jiang, FC Zeng, LZ Gao - Scientific reports, 2016‏ - nature.com
Prokaryotes possess a simple genome transcription system that is different from that of
eukaryotes. In chloroplasts (plastids), it is believed that the prokaryotic gene transcription …

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome

AM Hotto, RJ Schmitz, Z Fei, JR Ecker… - G3: Genes| Genomes …, 2011‏ - academic.oup.com
Noncoding RNAs (ncRNA) are widely expressed in both prokaryotes and eukaryotes.
Eukaryotic ncRNAs are commonly micro-and small-interfering RNAs (18–25 nt) involved in …

Organellar non-coding RNAs: emerging regulation mechanisms

A Dietrich, C Wallet, RK Iqbal, JM Gualberto, F Lotfi - Biochimie, 2015‏ - Elsevier
Originally focused on the nuclear and cytosolic compartments, the concept of regulation
driven by non-coding RNAs (ncRNAs) is extending to mitochondria and chloroplasts. These …