Constructing a broadly inclusive seed plant phylogeny

SA Smith, JW Brown - American journal of botany, 2018 - Wiley Online Library
Premise of the Study Large phylogenies can help shed light on macroevolutionary patterns
that inform our understanding of fundamental processes that shape the tree of life. These …

The energetic costs of sub‐lethal helminth parasites in mammals: a meta‐analysis

KM Shanebeck, AA Besson, C Lagrue… - Biological …, 2022 - Wiley Online Library
Parasites, by definition, have a negative effect on their host. However, in wild mammal
health and conservation research, sub‐lethal infections are commonly assumed to have …

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

CE Hinchliff, SA Smith, JF Allman, JG Burleigh… - Proceedings of the …, 2015 - pnas.org
Reconstructing the phylogenetic relationships that unite all lineages (the tree of life) is a
grand challenge. The paucity of homologous character data across disparately related …

Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics

GA Bravo, A Antonelli, CD Bacon, K Bartoszek… - PeerJ, 2019 - peerj.com
ABSTRACT Building the Tree of Life (ToL) is a major challenge of modern biology, requiring
advances in cyberinfrastructure, data collection, theory, and more. Here, we argue that …

Automated assembly of a reference taxonomy for phylogenetic data synthesis

JA Rees, K Cranston - Biodiversity Data Journal, 2017 - pmc.ncbi.nlm.nih.gov
Taxonomy and nomenclature data are critical for any project that synthesizes biodiversity
data, as most biodiversity data sets use taxonomic names to identify taxa. Open Tree of Life …

How and why to build a unified tree of life

EJ McTavish, BT Drew, B Redelings, KA Cranston - BioEssays, 2017 - Wiley Online Library
Phylogenetic trees are a crucial backbone for a wide breadth of biological research
spanning systematics, organismal biology, ecology, and medicine. In 2015, the Open Tree of …

[HTML][HTML] A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism

JP Bernot, GA Boxshall, KA Crandall - PeerJ, 2021 - peerj.com
The Copepoda is a clade of pancrustaceans containing 14,485 species that are extremely
varied in their morphology and lifestyle. Not only do copepods dominate marine plankton …

To increase trust, change the social design behind aggregated biodiversity data

NM Franz, BW Sterner - Database, 2018 - academic.oup.com
Growing concerns about the quality of aggregated biodiversity data are lowering trust in
large-scale data networks. Aggregators frequently respond to quality concerns by …

More social species live longer, have longer generation times and longer reproductive windows

R Salguero-Gómez - Philosophical Transactions B, 2024 - royalsocietypublishing.org
The role of sociality in the demography of animals has become an intense focus of research
in recent decades. However, efforts to understand the sociality–demography nexus have …

A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species

BD Redelings, MT Holder - PeerJ, 2017 - peerj.com
We present a new supertree method that enables rapid estimation of a summary tree on the
scale of millions of leaves. This supertree method summarizes a collection of input …