DNA barcoding, an effective tool for species identification: a review

S Antil, JS Abraham, S Sripoorna, S Maurya… - Molecular biology …, 2023 - Springer
DNA barcoding is a powerful taxonomic tool to identify and discover species. DNA
barcoding utilizes one or more standardized short DNA regions for taxon identification. With …

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …

In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma

F Cai, IS Druzhinina - Fungal Diversity, 2021 - Springer
Modern taxonomy has developed towards the establishment of global authoritative lists of
species that assume the standardized principles of species recognition, at least in a given …

Surveillance of SARS-CoV-2 at the Huanan seafood market

WJ Liu, P Liu, W Lei, Z Jia, X He, W Shi, Y Tan, S Zou… - Nature, 2024 - nature.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of
coronavirus disease 2019, emerged in December 2019. Its origins remain uncertain. It has …

Environmental DNA shedding and decay rates from diverse animal forms and thermal regimes

E Andruszkiewicz Allan, WG Zhang… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA) analysis from water samples is a promising new method to
identify both targeted species and whole communities of aquatic organisms. However, the …

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

P Kapli, S Lutteropp, J Zhang, K Kobert… - …, 2017 - academic.oup.com
Motivation In recent years, molecular species delimitation has become a routine approach
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …

How quantitative is metabarcoding: A meta‐analytical approach

PD Lamb, E Hunter, JK Pinnegar, S Creer… - Molecular …, 2019 - Wiley Online Library
Metabarcoding has been used in a range of ecological applications such as taxonomic
assignment, dietary analysis and the analysis of environmental DNA. However, after a …

[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity

PF Thomsen, E Willerslev - Biological conservation, 2015 - Elsevier
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …

So many variables: joint modeling in community ecology

DI Warton, FG Blanchet, RB O'Hara… - Trends in ecology & …, 2015 - cell.com
Technological advances have enabled a new class of multivariate models for ecology, with
the potential now to specify a statistical model for abundances jointly across many taxa, to …

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

S Yamamoto, R Masuda, Y Sato, T Sado, H Araki… - Scientific reports, 2017 - nature.com
Environmental DNA (eDNA) metabarcoding has emerged as a potentially powerful tool to
assess aquatic community structures. However, the method has hitherto lacked field tests …